CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava12557.valid.m1
(
Manihot esculenta
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00313 (CSD)
IPR002059
cassava12557.valid.m1
T165362_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava12557.valid.m1
CSD
6
72
ITGKVKWFSDQKGFGFITPDDGGEDLFVHQSSIRSEGYRSLGEGEEVEFQIEQSDDGRTKAVDVTGP
Links
Other
CSD
family TFs
Other
Manihot esculenta
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava29163.valid.m1
Manihot esculenta
cassava29163.valid.m1
N
0.924
SapurV1A.0117s0150
Salix purpurea
SapurV1A.0117s0150
N
0.879
POPTR_0004s17840
Populus trichocarpa
POPTR_0004s17840
N
0.864
POPTR_0009s13460
Populus trichocarpa
POPTR_0009s13460
N
0.864
VIT_03s0038g02130
Vitis vinifera
VIT_03s0038g02130
I
0.864
SapurV1A.0514s0160
Salix purpurea
SapurV1A.0514s0160
N
0.864
evm.TU.supercontig_37.170
Carica papaya
evm.TU.supercontig_37.170
N
0.833
Lus10005066.g
Linum usitatissimum
Lus10005066.g
N
0.833
Lus10027839.g
Linum usitatissimum
Lus10027839.g
N
0.833
PGSC0003DMG400001590
Solanum tuberosum
PGSC0003DMG400001590
N
0.818
VIT_04s0023g03520
Vitis vinifera
VIT_04s0023g03520
N
0.818
gene07618-v1.0-hybrid
Fragaria vesca
gene07618-v1.0-hybrid
N
0.818
Cla016088
Citrullus lanatus
Cla016088
N
0.803
Pm020837
Prunus mume
Pm020837
I
0.803
Cucsa.381750
Cucumis sativus
Cucsa.381750
N
0.803
Solyc01g111300.2
Solanum lycopersicum
Solyc01g111300.2
N
0.788
Gorai.002G003500
Gossypium raimondii
Gorai.002G003500
N
0.788
MDP0000225222
Malus domestica
MDP0000225222
N
0.788
BRADI3G01960
Brachypodium distachyon
BRADI3G01960
N
0.773
GLYMA11G11290
Glycine max
GLYMA11G11290
N
0.773
GRMZM2G389768
Zea mays
GRMZM2G389768
N
0.773
Sb04g001720
Sorghum bicolor
Sb04g001720
N
0.773
Ca_11038
Cicer arietinum
Ca_11038
N
0.773
MDP0000121628
Malus domestica
MDP0000121628
N
0.773
MDP0000155077
Malus domestica
MDP0000155077
N
0.773
MDP0000202739
Malus domestica
MDP0000202739
N
0.773
Pavir.J33226
Panicum virgatum
Pavir.J33226
N
0.773
Pavir.J33349
Panicum virgatum
Pavir.J33349
N
0.773
Bo7g049880
Brassica oleracea
Bo7g049880
I
0.758
GLYMA04G00660
Glycine max
GLYMA04G00660
N
0.758
GLYMA12G03470
Glycine max
GLYMA12G03470
N
0.758
ONIVA02G01490
Oryza nivara
ONIVA02G01490
N
0.758
PGSC0003DMG400023206
Solanum tuberosum
PGSC0003DMG400023206
I
0.758
Solyc10g055250.1
Solanum lycopersicum
Solyc10g055250.1
I
0.758
gw1.103.78.1
Physcomitrella patens
gw1.103.78.1
N
0.758
estExt_fgenesh1_pg.C_10541
Coccomyxa subellipsoidea C169
estExt_fgenesh1_pg.C_10541
N
0.758
evm.TU.supercontig_6.261
Carica papaya
evm.TU.supercontig_6.261
N
0.758
Gorai.002G195000
Gossypium raimondii
Gorai.002G195000
I
0.758
Gorai.002G195100
Gossypium raimondii
Gorai.002G195100
I
0.758
Gorai.005G253200
Gossypium raimondii
Gorai.005G253200
I
0.758
Gorai.008G062500
Gossypium raimondii
Gorai.008G062500
N
0.758
estExt_fgeneshCV_pm.C_10002
Chlorella vulgaris
estExt_fgeneshCV_pm.C_10002
N
0.758
BGIOSGA007226
Oryza indica
BGIOSGA007226
N
0.742
Bo4g145670
Brassica oleracea
Bo4g145670
I
0.742
Bra030325
Brassica rapa
Bra030325
I
0.742
LPERR02G01370
Leersia perrieri
LPERR02G01370
N
0.742
OBART02G01600
Oryza barthii
OBART02G01600
N
0.742
OGLUM02G01470
Oryza glumaepatula
OGLUM02G01470
N
0.742
OMERI02G00930
Oryza meridionalis
OMERI02G00930
N
0.742
OPUNC02G01060
Oryza punctata
OPUNC02G01060
N
0.742
ORGLA02G0014700
Oryza glaberrima
ORGLA02G0014700
N
0.742
ORUFI02G01580
Oryza rufipogon
ORUFI02G01580
N
0.742
OS02G0121100
Oryza sativa
OS02G0121100
N
0.742
PRUPE_ppa010531mg
Prunus persica
PRUPE_ppa010531mg
N
0.742
SELMODRAFT_186937
Selaginella moellendorffii
SELMODRAFT_186937
N
0.742
SELMODRAFT_187582
Selaginella moellendorffii
SELMODRAFT_187582
N
0.742
Traes_6AS_539B381F1
Triticum aestivum
Traes_6AS_539B381F1
N
0.742
Pm026767
Prunus mume
Pm026767
N
0.742
estExt_gwp_gw1.C_410063
Physcomitrella patens
estExt_gwp_gw1.C_410063
N
0.742
estExt_gwp_gw1.C_640002
Physcomitrella patens
estExt_gwp_gw1.C_640002
N
0.742
mgf015980m
Mimulus guttatus
mgf015980m
I
0.742
Bostr.7867s1467
Boechera stricta
Bostr.7867s1467
N
0.742
MDP0000198079
Malus domestica
MDP0000198079
N
0.742
MDP0000632148
Malus domestica
MDP0000632148
N
0.742
PK01533.1
Cannabis sativa
PK01533.1
N
0.742
PK03316.1
Cannabis sativa
PK03316.1
N
0.742
chr3.CM0112.180.nd
Lotus japonicus
chr3.CM0112.180.nd
N
0.742
AMTR_s00041p00167350
Amborella trichopoda
AMTR_s00041p00167350
N
0.727
Bo7g117730
Brassica oleracea
Bo7g117730
N
0.727
Bo8g102040
Brassica oleracea
Bo8g102040
I
0.727
Bra017742
Brassica rapa
Bra017742
N
0.727
Bra031159
Brassica rapa
Bra031159
I
0.727
BRADI1G02650
Brachypodium distachyon
BRADI1G02650
N
0.727
BRADI2G07090
Brachypodium distachyon
BRADI2G07090
N
0.727
PGSC0003DMG400001591
Solanum tuberosum
PGSC0003DMG400001591
N
0.727
mgf001526m
Mimulus guttatus
mgf001526m
N
0.727
mgf014458m
Mimulus guttatus
mgf014458m
N
0.727
Bostr.18351s0255
Boechera stricta
Bostr.18351s0255
N
0.727
EuGene.0200010100
Micromonas sp RCC299
EuGene.0200010100
N
0.727
fgenesh1_pg.1_#_433
Coccomyxa subellipsoidea C169
fgenesh1_pg.1_#_433
N
0.727
Lus10025058.g
Linum usitatissimum
Lus10025058.g
N
0.727
chr6.CM0045.280.nd
Lotus japonicus
chr6.CM0045.280.nd
N
0.727
e_gw1.1.536.1
Chlorella vulgaris
e_gw1.1.536.1
N
0.727
AMTR_s00017p00206510
Amborella trichopoda
AMTR_s00017p00206510
N
0.712
BGIOSGA027713
Oryza indica
BGIOSGA027713
N
0.712
Bo1g006000
Brassica oleracea
Bo1g006000
N
0.712
BRADI1G02640
Brachypodium distachyon
BRADI1G02640
N
0.712
CSDP1
Arabidopsis lyrata
fgenesh2_kg.7__465__AT4G36020.1
N
0.712
GLYMA02G05335
Glycine max
GLYMA02G05335
N
0.712
GLYMA16G23695
Glycine max
GLYMA16G23695
N
0.712
LPERR08G02000
Leersia perrieri
LPERR08G02000
N
0.712
OGLUM08G01920
Oryza glumaepatula
OGLUM08G01920
N
0.712
OMERI08G01940
Oryza meridionalis
OMERI08G01940
N
0.712
ONIVA08G01720
Oryza nivara
ONIVA08G01720
N
0.712
ORGLA08G0012100
Oryza glaberrima
ORGLA08G0012100
N
0.712
ORUFI08G02050
Oryza rufipogon
ORUFI08G02050
N
0.712
OS08G0129200
Oryza sativa
OS08G0129200
N
0.712
SELMODRAFT_154869
Selaginella moellendorffii
SELMODRAFT_154869
N
0.712
AZW_EuGene.0000110131
Micromonas pusilla
AZW_EuGene.0000110131
N
0.712
Bostr.25542s0051
Boechera stricta
Bostr.25542s0051
I
0.712
Cagra.2961s0009
Capsella grandiflora
Cagra.2961s0009
I
0.712
gene26519-v1.0-hybrid
Fragaria vesca
gene26519-v1.0-hybrid
N
0.712
MDP0000292743
Malus domestica
MDP0000292743
N
0.712
Pavir.Ab00211
Panicum virgatum
Pavir.Ab00211
N
0.712
chr4.CM0119.380.nc
Lotus japonicus
chr4.CM0119.380.nc
N
0.712