Pavir.Ab00211 (Panicum virgatum)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Pavir.Ab00211 T165478_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00211.1.p CSD 7 70

Links

Other CSD family TFs
Other Panicum virgatum TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.984
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.984
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.984
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.968
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.873
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.857
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.841
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.841
OBART02G01600 Oryza barthii OBART02G01600 N 0.841
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.841
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.818
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.818
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.818
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.818
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.818
OS02G0121100 Oryza sativa OS02G0121100 N 0.818
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N 0.778
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.778
TRIUR3_31144 Triticum urartu TRIUR3_31144 N 0.762
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.762
BRADI2G07090 Brachypodium distachyon BRADI2G07090 N 0.746
Ciclev10002696m.g Citrus clementina Ciclev10002696m.g N 0.746
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.746
orange1.1g030905m.g Citrus sinensis orange1.1g030905m.g N 0.746
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.746
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.742
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.730
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N 0.730
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.730
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.730
MDP0000155077 Malus domestica MDP0000155077 N 0.730
MDP0000202739 Malus domestica MDP0000202739 N 0.730
PK01533.1 Cannabis sativa PK01533.1 N 0.730
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N 0.730
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.727
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.727
AMTR_s00017p00206510 Amborella trichopoda AMTR_s00017p00206510 N 0.714
BGIOSGA027713 Oryza indica BGIOSGA027713 N 0.714
Bo7g049880 Brassica oleracea Bo7g049880 I 0.714
CHLREDRAFT_126810 Chlamydomonas reinhardtii CHLREDRAFT_126810 N 0.714
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N 0.714
OMERI08G01940 Oryza meridionalis OMERI08G01940 N 0.714
ONIVA08G01720 Oryza nivara ONIVA08G01720 N 0.714
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N 0.714
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N 0.714
OS08G0129200 Oryza sativa OS08G0129200 N 0.714
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.714
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.714
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.714
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.714
TCM_000198 Theobroma cacao TCM_000198 N 0.714
estExt_Genewise1Plus.C_10818 Volvox carteri estExt_Genewise1Plus.C_10818 N 0.714
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.714
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.714
gene11124-v1.0-hybrid Fragaria vesca gene11124-v1.0-hybrid N 0.714
Gorai.008G062500 Gossypium raimondii Gorai.008G062500 N 0.714
MDP0000225222 Malus domestica MDP0000225222 N 0.714
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.714
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.712
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.712