CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo8g016640
(
Brassica oleracea
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02319 (E2F_TDP)
IPR003316
Bo8g016640
T172330_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
E2FC
M06870_2.00
Arabidopsis thaliana
AWDDDGGCGCCAAAR
YTTTGGCGCCHHHWT
Dap-seq
OMalley et al.(2016)
E2FC_col_a
0.923
0.923
estExt_gwp_gw1.C_220046
M01225_2.00
Physcomitrella patens
VGCGCBHHNN
NNDDVGCGCB
PBM
Lambert et al.(2019)
pTH9809
0.800
0.800
e_gw1.38.2.1
M01968_2.00
Physcomitrella patens
NSGCGCBHHN
NDDVGCGCSN
PBM
Weirauch et al.(2014)
pTH5707
0.785
0.785
E2FA
M06871_2.00
Arabidopsis thaliana
NDDDGGCGCCAWWW
WWWTGGCGCCHHHN
Dap-seq
OMalley et al.(2016)
E2FA_col_a
0.785
0.785
E2FA
M06872_2.00
Arabidopsis thaliana
DDWDGGCGCCAWAD
HTWTGGCGCCHWHH
Dap-seq
OMalley et al.(2016)
E2FA_colamp_a
0.785
0.785
E2FA
M08106_2.00
Arabidopsis thaliana
NVGCGCCAHN
NDTGGCGCBN
ChIP-seq
Mathelier et al.(2014)
MA1414.1
0.785
0.785
ENSACAG00000013716
M01960_2.00
Anolis carolinensis
HNVGCGCBND
HNVGCGCBND
PBM
Weirauch et al.(2014)
pTH9221
0.723
0.723
E2F2
M01961_2.00
Homo sapiens
DNSGCGCSNH
DNSGCGCSNH
PBM
Weirauch et al.(2014)
pTH9195
0.708
0.708
E2f2
M00154_2.00
Mus musculus
NDNNGCGSBN
NVSCGCNNHN
PBM
Badis et al.(2009)
E2F2_1022
0.708
0.708
ENSOANG00000014967
M01962_2.00
Ornithorhynchus anatinus
NDSGCGCSHN
NDSGCGCSHN
PBM
Weirauch et al.(2014)
pTH9382
0.708
0.708
E2F2
M01963_2.00
Tupaia belangeri
WDVGCGCBHW
WDVGCGCBHW
PBM
Weirauch et al.(2014)
pTH9291
0.708
0.708
E2F2
M02949_2.00
Homo sapiens
AAAAATGGCGCCAAAAWD
HWTTTTGGCGCCATTTTT
SELEX
Jolma et al.(2013)
E2F2_1
0.708
0.708
E2F2
M02950_2.00
Homo sapiens
VDTTTTGGCGCCAAAAHN
NDTTTTGGCGCCAAAAHB
SELEX
Jolma et al.(2013)
E2F2_2
0.708
0.708
E2F2
M02951_2.00
Homo sapiens
AAAWWGGCGCCAWTTT
AAAWTGGCGCCWWTTT
SELEX
Jolma et al.(2013)
E2F2_3
0.708
0.708
E2F4
M02961_2.00
Homo sapiens
AATGGCGCCAAA
TTTGGCGCCATT
SELEX
Jolma et al.(2013)
E2F4_1
0.708
0.708
E2F4
M02962_2.00
Homo sapiens
TTTGGCGCCAAA
TTTGGCGCCAAA
SELEX
Jolma et al.(2013)
E2F4_2
0.708
0.708
E2F4
M04707_2.00
Homo sapiens
NWWKGGCGCCAAAW
WTTTGGCGCCMWWN
SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX
0.708
0.708
E2F2
M04696_2.00
Homo sapiens
GCGCGCGCSYW
WRSGCGCGCGC
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_1
0.708
0.708
E2F2
M04697_2.00
Homo sapiens
NDWWDGGCGCCWWHWN
NWDWWGGCGCCHWWHN
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_2
0.708
0.708
E2F4
M08109_2.00
Homo sapiens
NSGCGGGARVN
NBYTCCCGCSN
ChIP-seq
Mathelier et al.(2014)
MA0470.1
0.708
0.708
E2F4
M07942_2.00
Homo sapiens
SGCGSGARDNNBNVN
NBNVNNHYTCSCGCS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD
0.708
0.708
E2F4
M07943_2.00
Homo sapiens
SGCGGGARDNNBVVN
NBBVNNHYTCCCGCS
ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD
0.708
0.708
E2F2
M09029_2.00
Homo sapiens
GGCGCGMAWC
GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_HUMAN.H11MO.0.B
0.708
0.708
E2F4
M09036_2.00
Homo sapiens
VDRGGCGGGRVND
HNBYCCCGCCYHB
Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A
0.708
0.708
E2f2
M09039_2.00
Mus musculus
GGCGCGMAWC
GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_MOUSE.H11MO.0.B
0.708
0.708
E2f4
M09037_2.00
Mus musculus
NRDDGGCGGGRMNN
NNKYCCCGCCHHYN
Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A
0.708
0.708
E2F4
M09524_2.00
Homo sapiens
VGCGSGAADH
DHTTCSCGCB
Misc
Heinz et al.(2010)
K562-E2F4_GSE31477
0.708
0.708
E2F4
M10457_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_05
0.708
0.708
E2F4
M10458_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q3
0.708
0.708
E2F4
M10459_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q6
0.708
0.708
E2F2
M04698_2.00
Homo sapiens
SGBGSGCGCGS
SCGCGCSCVCS
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_1
0.708
0.708
E2F2
M04699_2.00
Homo sapiens
DWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWH
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_2
0.708
0.708
E2f5
M09042_2.00
Mus musculus
NGCGCSAAAN
NTTTSGCGCN
Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B
0.692
0.692
E2F3
M01964_2.00
Taeniopygia guttata
NNSGCGCGMN
NKCGCGCSNN
PBM
Weirauch et al.(2014)
pTH9288
0.677
0.677
E2f3
M00153_2.00
Mus musculus
NNNNGCGSNN
NNSCGCNNNN
PBM
Badis et al.(2009)
E2F3_3752
0.662
0.662
E2F3
M02956_2.00
Homo sapiens
RAAAAKGGCGCCAAAANN
NNTTTTGGCGCCMTTTTY
SELEX
Jolma et al.(2013)
E2F3_1
0.662
0.662
E2F3
M02957_2.00
Homo sapiens
DAAAADGGCGCCMWWTTY
RAAWWKGGCGCCHTTTTH
SELEX
Jolma et al.(2013)
E2F3_2
0.662
0.662
E2F3
M02958_2.00
Homo sapiens
NDTTTTGGCGCCAAAABH
DVTTTTGGCGCCAAAAHN
SELEX
Jolma et al.(2013)
E2F3_3
0.662
0.662
E2F3
M04701_2.00
Homo sapiens
DWTTTGGCGCCAAAWH
DWTTTGGCGCCAAAWH
SELEX
Yin et al.(2017)
E2F3_eDBD_HT-SELEX
0.662
0.662
E2F3
M09031_2.00
Homo sapiens
NDGGCGGGAAR
YTTCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F3_HUMAN.H11MO.0.A
0.662
0.662
E2f3
M09038_2.00
Mus musculus
DSGCGGGARV
BYTCCCGCSH
Misc
Kulakovskiy et al.(2013)
E2F3_MOUSE.H11MO.0.A
0.662
0.662
E2F3
M10454_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6_01
0.662
0.662
E2F3
M10455_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F3_Q6
0.662
0.662
E2F3
M04702_2.00
Homo sapiens
DTTTTGGCGCCAAAAH
DTTTTGGCGCCAAAAH
SELEX
Yin et al.(2017)
E2F3_eDBD_Methyl-HT-SELEX
0.662
0.662
GSPATT00020286001
M01965_2.00
Paramecium tetraurelia
NNSGCGSBN
NVSCGCSNN
PBM
Weirauch et al.(2014)
pTH5647
0.631
0.631
efl-1
M08110_2.00
Caenorhabditis elegans
HNHNSGCGSSAAWWN
NWWTTSSCGCSNDND
ChIP-seq
Mathelier et al.(2014)
MA0541.1
0.631
0.631
efl-1
M08197_2.00
Caenorhabditis elegans
BGCGSSAAWW
WWTTSSCGCV
ChIP-seq
Contrino et al.(2012)
Mw140
0.631
0.631
efl-1
M09526_2.00
Caenorhabditis elegans
WGCAARYGCGCTCYA
TRGAGCGCRYTTGCW
Misc
Heinz et al.(2010)
cElegans-L1-EFL1_modEncode
0.631
0.631
E2F1
M02952_2.00
Homo sapiens
WWDGGCGCCAAW
WTTGGCGCCHWW
SELEX
Jolma et al.(2013)
E2F1_1
0.615
0.615
E2F1
M02953_2.00
Homo sapiens
WWKGGCGCCWWW
WWWGGCGCCMWW
SELEX
Jolma et al.(2013)
E2F1_2
0.615
0.615
E2F1
M02954_2.00
Homo sapiens
WWWKGGCGCCMWWW
WWWKGGCGCCMWWW
SELEX
Jolma et al.(2013)
E2F1_3
0.615
0.615
E2F1
M02955_2.00
Homo sapiens
AAWKGGCGCCAWTW
WAWTGGCGCCMWTT
SELEX
Jolma et al.(2013)
E2F1_4
0.615
0.615
E2F1
M04700_2.00
Homo sapiens
NWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWN
SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX
0.615
0.615
E2F1
M07938_2.00
Homo sapiens
VRRVNRVGCGSGMDS
SHKCSCGCBYNBYYB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD
0.615
0.615
E2F1
M09030_2.00
Homo sapiens
NVNDGGCGGGARVN
NBYTCCCGCCHNBN
Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A
0.615
0.615
E2f1
M09041_2.00
Mus musculus
NDDGGCGGGRVN
NBYCCCGCCHHN
Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A
0.615
0.615
E2F1
M09521_2.00
Homo sapiens
NNGGCGGGAA
TTCCCGCCNN
Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478
0.615
0.615
E2F1
M10444_2.00
Homo sapiens
THVGCGCGAAAAHKR
YMDTTTTCGCGCBDA
Transfac
Matys et al.(2006)
V$E2F_01
0.615
0.615
E2F1
M10445_2.00
Homo sapiens
BHKSGCGCSAAA
TTTSGCGCSMDV
Transfac
Matys et al.(2006)
V$E2F_03
0.615
0.615
E2F1
M10446_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_01
0.615
0.615
E2F1
M10447_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_02
0.615
0.615
E2F1
M10448_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3_01
0.615
0.615
E2F1
M10449_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3
0.615
0.615
E2F1
M10450_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_01
0.615
0.615
E2F1
M10451_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_02
0.615
0.615
E2F1
M10452_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4
0.615
0.615
E2F1
M10453_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6
0.615
0.615
E2F6
M08107_2.00
Homo sapiens
DGGMGGGARVN
NBYTCCCKCCH
ChIP-seq
Mathelier et al.(2014)
MA0471.1
0.600
0.600
E2F6
M07939_2.00
Homo sapiens
NDSGCGGGARV
BYTCCCGCSHN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F6_UCD
0.600
0.600
E2F6
M07940_2.00
Homo sapiens
NDVGCGGGARV
BYTCCCGCBHN
ChIP-seq
Gerstein et al.(2012)
K562b_E2F6_UCD
0.600
0.600
E2F6
M07941_2.00
Homo sapiens
NDSGCGGGARV
BYTCCCGCSHN
ChIP-seq
Gerstein et al.(2012)
K562_E2F6_HudsonAlpha
0.600
0.600
E2f
M08196_2.00
Drosophila melanogaster
AAWWBSSCGSCAA
TTGSCGSSVWWTT
ChIP-seq
Contrino et al.(2012)
Mf10
0.600
0.600
E2F6
M09034_2.00
Homo sapiens
NRGGMGGGARRNN
NNYYTCCCKCCYN
Misc
Kulakovskiy et al.(2013)
E2F6_HUMAN.H11MO.0.A
0.600
0.600
E2f6
M09043_2.00
Mus musculus
NDGGCGGGARVV
BBYTCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F6_MOUSE.H11MO.0.A
0.600
0.600
E2F6
M09523_2.00
Homo sapiens
VGCGGGARNN
NNYTCCCGCB
Misc
Heinz et al.(2010)
Hela-E2F6_GSE31477
0.600
0.600
E2F6
M10456_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F6_01
0.600
0.600
E2F
M01959_2.00
Dictyostelium discoideum
NNGSGCGCSHN
NDSGCGCSCNN
PBM
Weirauch et al.(2014)
pTH5403
0.585
0.585
estExt_gwp_GeneWisePlus.C_Chr_02.00010270
M01969_2.00
Ostreococcus tauri
HRVGCGCCNN
NNGGCGCBYD
PBM
Weirauch et al.(2014)
pTH5701
0.523
0.523
efl-2
M01966_2.00
Caenorhabditis elegans
NDBGCGSBNN
NNVSCGCVHN
PBM
Weirauch et al.(2014)
pTH5916
0.477
0.477
efl-2
M00662_2.00
Caenorhabditis elegans
NSGCGSNNDN
NHNNSCGCSN
PBM
Narasimhan et al.(2015)
pTH9173
0.477
0.477
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo8g016640.1
E2F
146
210
YDSSLGLLTKKFVNLIREAEDGSLDLNYCADVLEVQKRRIYDITNVLEGVGLIEKTTKNHIRWKG
Links
Other
E2F
family TFs
Other
Brassica oleracea
TFs
1042 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy