fgenesh_scip_prom.46568.2724 (Phytophthora kernoviae)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 fgenesh_scip_prom.46568.2724 T173120_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.470 0.470
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.470 0.470
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.470 0.470
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.461 0.461
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.461 0.461
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.461 0.461
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.461 0.461
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.461 0.461
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.461 0.461
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.461 0.461
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.461 0.461
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.461 0.461
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.435 0.435
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.435 0.435
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.435 0.435
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.435 0.435
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh_scip_prom.46568.2724 E2F 23 83
fgenesh_scip_prom.46568.2724 E2F 73 134

Links

Other E2F family TFs
Other Phytophthora kernoviae TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PITG_06416 Phytophthora infestans PITG_06416 I 0.696
Physo156920 Phytophthora sojae Physo156920 I 0.632
F443_02115 Phytophthora parasitica F443_02115 I 0.625
e_gw1.178.5.1 Phytophthora capsici e_gw1.178.5.1 I 0.625
maker-piw_contig_1993-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1993-fgenesh-gene-0.1 I 0.588
maker-pir_contig_104-fgenesh-gene-0.11 Pythium irregulare maker-pir_contig_104-fgenesh-gene-0.11 I 0.581
PYU1_G013070 Pythium ultimum PYU1_G013070 I 0.581
maker-pag1_scaffold_45-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_45-snap-gene-0.28 I 0.559
maker-pve_contig_484-snap-gene-0.19 Pythium vexans maker-pve_contig_484-snap-gene-0.19 I 0.551
Phyra77344 Phytophthora ramorum Phyra77344 I 0.519
MTR_4g106540 Medicago truncatula MTR_4g106540 I 0.478
POPTR_0012s07700 Populus trichocarpa POPTR_0012s07700 I 0.478
POPTR_0015s08160 Populus trichocarpa POPTR_0015s08160 I 0.478
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.478
TCM_017926 Theobroma cacao TCM_017926 I 0.478
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.478
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.478
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.478
Solyc03g113760.2 Solanum lycopersicum Solyc03g113760.2 I 0.470
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.470
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.470
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.470
SapurV1A.0161s0320 Salix purpurea SapurV1A.0161s0320 I 0.470
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.470
CMT433C Cyanidioschyzon merolae CMT433C I 0.461
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.461
Cagra.1036s0060 Capsella grandiflora Cagra.1036s0060 I 0.461
Carubv10001291m.g Capsella rubella Carubv10001291m.g I 0.461
ALNC14_032570 Albugo laibachii ALNC14_032570 I 0.456
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.452
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.452
OBART06G09260 Oryza barthii OBART06G09260 I 0.452
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.452
Cla008447 Citrullus lanatus Cla008447 I 0.447
OSTLU_42726 Ostreococcus lucimarinus OSTLU_42726 I 0.443
fgenesh_scip_prom.28083.1342 Phytophthora lateralis fgenesh_scip_prom.28083.1342 I 0.437
E2FD Arabidopsis thaliana AT5G14960 D 0.435
LotgiG168338 Lottia gigantea LotgiG168338 I 0.435
OGLUM02G32560 Oryza glumaepatula OGLUM02G32560 I 0.435
Gorai.006G027400 Gossypium raimondii Gorai.006G027400 I 0.435