CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.004G114000
(
Gossypium raimondii
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02319 (E2F_TDP)
IPR003316
Gorai.004G114000
T173947_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
E2FE
M01958_2.00
Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD
PBM
Weirauch et al.(2014)
pTH8176
0.838
0.838
E2FE
M06873_2.00
Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA
Dap-seq
OMalley et al.(2016)
DEL1_col_a
0.838
0.838
E2FE
M06874_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL1_colamp_a
0.811
0.811
E2FD
M06875_2.00
Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH
Dap-seq
OMalley et al.(2016)
DEL2_col_a
0.646
0.646
E2FD
M06876_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL2_colamp_a
0.654
0.654
E2FD
M10442_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$E2L1_Q2
0.654
0.654
E2FD
M10443_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$E2L_Q2
0.654
0.654
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.603
0.603
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.603
0.603
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.603
0.603
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.603
0.603
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.603
0.603
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.603
0.603
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.596
0.596
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.596
0.596
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.596
0.596
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.004G114000.1
E2F
22
86
KQKSLGLLCSNFLSMYNKDGIEFIGLDEAAARLGVERRRIYDIVNVLESVGVLTRKAKNKYTWKG
Gorai.004G114000.1
E2F
159
238
REKSLGLLTQNFVKLFLCSSAELISLDEAAKLLLGNAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTVDTRKPAFRWLG
Gorai.004G114000.2
E2F
22
77
KQKSLGLLCSNFLSMYNKDGIEFIGLDEAAARLGVERRRIYDIVNVLESVGVSDDD
Gorai.004G114000.2
E2F
115
194
REKSLGLLTQNFVKLFLCSSAELISLDEAAKLLLGNAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTVDTRKPAFRWLG
Links
Other
E2F
family TFs
Other
Gossypium raimondii
TFs
340 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy