Gorai.004G114000 (Gossypium raimondii)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Gorai.004G114000 T173947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2FE
M01958_2.00
Arabidopsis thaliana
HDSGCGCSHD

HDSGCGCSHD
PBM
Weirauch et al.(2014)
pTH8176
0.838 0.838
E2FE
M06873_2.00
Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN

NHHNWNWWTTTCCCGCCAAAA
Dap-seq
OMalley et al.(2016)
DEL1_col_a
0.838 0.838
E2FE
M06874_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA

TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL1_colamp_a
0.811 0.811
E2FD
M06875_2.00
Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW

WTTTCCCGCCAAAAHHDWWH
Dap-seq
OMalley et al.(2016)
DEL2_col_a
0.646 0.646
E2FD
M06876_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA

TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL2_colamp_a
0.654 0.654
E2FD
M10442_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$E2L1_Q2
0.654 0.654
E2FD
M10443_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$E2L_Q2
0.654 0.654
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.603 0.603
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN

NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.603 0.603
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.603 0.603
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.603 0.603
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN

NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.603 0.603
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.603 0.603
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA

TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.596 0.596
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN

NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.596 0.596
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN

NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.596 0.596
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G114000.1 E2F 22 86
Gorai.004G114000.1 E2F 159 238
Gorai.004G114000.2 E2F 22 77
Gorai.004G114000.2 E2F 115 194

Links

Other E2F family TFs
Other Gossypium raimondii TFs

Invalid Input OrderBy

340 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action