Alligator_sinensis_CCG017609.1 (Alligator sinensis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Alligator_sinensis_CCG017609.1 T174798_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		1.000 1.000
EBF2
M10466_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_02 		1.000 1.000
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.975 0.975
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.975 0.975
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.975 0.975
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.975 0.975
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.950 0.950
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.950 0.950
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.825 0.825
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017609.1 EBF1 1 40

Links

Other EBF1 family TFs
Other Alligator sinensis TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 1.000
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 1.000
EBF2 Bos taurus ENSBTAG00000040390 I 1.000
EBF2 Canis familiaris ENSCAFG00000008918 I 1.000
EBF2 Cavia porcellus ENSCPOG00000001463 I 1.000
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 1.000
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 1.000
EBF2 Homo sapiens ENSG00000221818 D 1.000
EBF2 Gallus gallus ENSGALG00000000242 I 1.000
EBF2 Gorilla gorilla ENSGGOG00000001585 I 1.000
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 1.000
EBF2 Loxodonta africana ENSLAFG00000022465 I 1.000
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 1.000
EBF2 Myotis lucifugus ENSMLUG00000011509 I 1.000
EBF4 Macaca mulatta ENSMMUG00000021331 I 1.000
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 1.000
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 1.000
ENSOANG00000004212 Ornithorhynchus anatinus ENSOANG00000004212 I 1.000
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 1.000
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 1.000
EBF2 Otolemur garnettii ENSOGAG00000010783 I 1.000
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 1.000
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 1.000
EBF2 Pan troglodytes ENSPTRG00000003058 I 1.000
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 1.000
EBF2 Sus scrofa ENSSSCG00000009655 I 1.000
ENSSTOG00000007966 Ictidomys tridecemlineatus ENSSTOG00000007966 I 1.000
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 1.000
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 1.000
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 1.000
Pvit_12666 Pogona vitticeps Pvit_12666 I 1.000
estExt_gwp.C_3380002 Branchiostoma floridae estExt_gwp.C_3380002 I 1.000
ebf2 Xenopus tropicalis XB-GENE-971136 I 1.000
ebf2.S Xenopus laevis XB-GENE-971141 I 1.000
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.975
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.975
EBF3 Bos taurus ENSBTAG00000008272 I 0.975
EBF3 Canis familiaris ENSCAFG00000013267 I 0.975
ENSCSAG00000010520 Chlorocebus sabaeus ENSCSAG00000010520 I 0.975
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I 0.975
EBF1 Dasypus novemcinctus ENSDNOG00000035396 I 0.975
EBF1 Equus caballus ENSECAG00000007964 I 0.975
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.975
ENSFCAG00000027202 Felis catus ENSFCAG00000027202 I 0.975
EBF3 Homo sapiens ENSG00000108001 D 0.975
EBF1 Homo sapiens ENSG00000164330 D 0.975
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.975
ENSLACG00000005494 Latimeria chalumnae ENSLACG00000005494 I 0.975
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.975
ENSMGAG00000016563 Meleagris gallopavo ENSMGAG00000016563 I 0.975
EBF3 Myotis lucifugus ENSMLUG00000005478 I 0.975
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.975
ENSMPUG00000002449 Mustela putorius furo ENSMPUG00000002449 I 0.975
ENSMPUG00000013414 Mustela putorius furo ENSMPUG00000013414 I 0.975
Ebf3 Mus musculus ENSMUSG00000010476 I 0.975
ENSOARG00000012836 Ovis aries ENSOARG00000012836 I 0.975
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.975
EBF4 Oryzias latipes ENSORLG00000020414 I 0.975
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I 0.975
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.975
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.975
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.975
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.975
ENSSHAG00000000353 Sarcophilus harrisii ENSSHAG00000000353 I 0.975
EBF1 Sus scrofa ENSSSCG00000017046 I 0.975
EBF1 Tupaia belangeri ENSTBEG00000007800 I 0.975
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.975
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.975
Aan_R013029 Calypte anna Aan_R013029 I 0.975
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I 0.975
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.975
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.975
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I 0.975
Pvit_11383 Pogona vitticeps Pvit_11383 I 0.975
Pvit_12046 Pogona vitticeps Pvit_12046 I 0.975
ENSCSAG00000010974 Chlorocebus sabaeus ENSCSAG00000010974 I 0.950
ebf1a Danio rerio ENSDARG00000099849 I 0.950
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.950
Ebf4 Mus musculus ENSMUSG00000053552 D 0.950
ENSNLEG00000009110 Nomascus leucogenys ENSNLEG00000009110 I 0.950
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.950
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.950
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.950
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.950
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.950
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.950
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.950
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.925
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.925
ebf1b Danio rerio ENSDARG00000069196 I 0.925
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.925
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.925
Myotis_brandtii_Ebf3_10024819 Myotis brandtii Myotis_brandtii_Ebf3_10024819 I 0.919
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I 0.900
Cmyd_10009821 Chelonia mydas Cmyd_10009821 I 0.900
EBF1 Callithrix jacchus ENSCJAG00000019016 I 0.875
ENSPMAG00000004238 Petromyzon marinus ENSPMAG00000004238 I 0.875
Myotis_brandtii_EBF2_10005813 Myotis brandtii Myotis_brandtii_EBF2_10005813 I 0.837
BTMF_0000130101 Brugia timori BTMF_0000130101 I 0.826
ACEP22947 Atta cephalotes ACEP22947 I 0.825
GF11778 Drosophila ananassae FBgn0088818 I 0.825
GH12956 Drosophila grimshawi FBgn0120434 I 0.825
GL10656 Drosophila persimilis FBgn0148266 I 0.825
GJ21945 Drosophila virilis FBgn0209060 I 0.825
GK23295 Drosophila willistoni FBgn0225257 I 0.825
GA24435 Drosophila pseudoobscura FBgn0245832 I 0.825
KGM_09934 Danaus plexippus KGM_09934 I 0.825
MCINX016126 Melitaea cinxia MCINX016126 I 0.825
Cflo_00077--XP_394171.3_APIME Camponotus floridanus Cflo_00077--XP_394171.3_APIME I 0.825
Hsal_03263--XP_394171.3_APIME Harpegnathos saltator Hsal_03263--XP_394171.3_APIME I 0.825
nRc.2.0.1.g14013 Romanomermis culicivorax nRc.2.0.1.g14013 I 0.825
BGIBMGA011565 Bombyx mori BGIBMGA011565 I 0.821
HMEL014948 Heliconius melpomene HMEL014948 I 0.821
estExt_gwp.C_3810003 Branchiostoma floridae estExt_gwp.C_3810003 I 0.814
Hba_09581 Heterorhabditis bacteriophora Hba_09581 I 0.812
ENSACAG00000010823 Anolis carolinensis ENSACAG00000010823 I 0.800
LOAG_18199 Loa loa LOAG_18199 I 0.800
Ocbimv22038949m.g Octopus bimaculoides Ocbimv22038949m.g I 0.800
SMU15024001 Schmidtea mediterranea SMU15024001 I 0.800
ACHR004409 Anopheles christyi ACHR004409 I 0.800
ADIR000236 Anopheles dirus ADIR000236 I 0.800
AFAF000230 Anopheles farauti AFAF000230 I 0.800
AFUN004906 Anopheles funestus AFUN004906 I 0.800
AMIN008984 Anopheles minimus AMIN008984 I 0.800
ASIS004664 Anopheles sinensis ASIS004664 I 0.800
MDOA011385 Musca domestica MDOA011385 I 0.800
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I 0.800
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.800
OFLC_0000294401 Onchocerca flexuosa OFLC_0000294401 I 0.800
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.775
LotgiG225788 Lottia gigantea LotgiG225788 I 0.775
LCUP013862 Lucilia cuprina LCUP013862 I 0.775
GPLIN_000159400 Globodera pallida GPLIN_000159400 I 0.775
L889_g1820 Steinernema feltiae L889_g1820 I 0.775
L898_g8304 Steinernema monticolum L898_g8304 I 0.775
OESDEN_10293 Oesophagostomum dentatum OESDEN_10293 I 0.775
CBG07590 Caenorhabditis briggsae CBG07590 I 0.750
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I 0.730
HelroG112029 Helobdella robusta HelroG112029 I 0.725
LDEC007542 Leptinotarsa decemlineata LDEC007542 I 0.725
CJA00446 Caenorhabditis japonica CJA00446 I 0.722
ADAC003479 Anopheles darlingi ADAC003479 I 0.703
ISCW021817 Ixodes scapularis ISCW021817 I 0.700
DILT_0000082701 Diphyllobothrium latum DILT_0000082701 I 0.700