PXEA_0001364901 (Protopolystoma xenopodis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) PXEA_0001364901 T174957_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.825 0.825
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.807 0.807
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.807 0.807
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.807 0.807
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.807 0.807
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.789 0.789
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.789 0.789
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.789 0.789
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0001364901-mRNA-1 EBF1 1 58

Links

Other EBF1 family TFs
Other Protopolystoma xenopodis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SINV26263 Solenopsis invicta SINV26263 I 0.958
ASTEI06455 Anopheles stephensi ASTEI06455 I 0.865
MDOA011385 Musca domestica MDOA011385 I 0.825
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I 0.825
RPRC005513 Rhodnius prolixus RPRC005513 I 0.821
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.807
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.807
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.807
LotgiG225788 Lottia gigantea LotgiG225788 I 0.807
MCINX016127 Melitaea cinxia MCINX016127 I 0.807
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.807
AMEC010301 Anopheles melas AMEC010301 I 0.807
GPLIN_000159400 Globodera pallida GPLIN_000159400 I 0.807
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.807
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.789
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.789
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I 0.789
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.789
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I 0.789
Ebf4 Mus musculus ENSMUSG00000053552 D 0.789
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I 0.789
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I 0.789
ebf2.S Xenopus laevis XB-GENE-971141 I 0.789
ANCCAN_06536 Ancylostoma caninum ANCCAN_06536 I 0.789
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.772
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.772
EBF2 Gallus gallus ENSGALG00000000242 I 0.772
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.772
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I 0.772
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I 0.772
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.772
HelroG112029 Helobdella robusta HelroG112029 I 0.772
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.772
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I 0.772
TRE_0001373801 Trichobilharzia regenti TRE_0001373801 I 0.717