Carubv10013213m.g (Capsella rubella)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04873 (EIN3) IPR006957 Carubv10013213m.g T175331_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EIN3
M00725_2.00 		Arabidopsis thaliana
NNRTDHAYNN
NNRTDHAYNN		 PBM
Chang et al.(2013)
pTH8729 		0.996 0.996
EIN3
M06878_2.00 		Arabidopsis thaliana
GDMYANRTWCAWTGH
DCAWTGWAYNTRKHC		 Dap-seq
OMalley et al.(2016)
EIN3_col_a 		0.996 0.996
EIN3
M06879_2.00 		Arabidopsis thaliana
RCCGTTR
YAACGGY		 Dap-seq
OMalley et al.(2016)
EIN3_colamp_a 		0.996 0.996
Q9ZWK1_TOBAC
M10470_2.00 		Nicotiana tabacum
AGRTWCAT
ATGWAYCT		 Transfac
Matys et al.(2006)
P$TEIL_01 		0.923 0.923
EIL1
M00724_2.00 		Arabidopsis thaliana
NNVRTDMRN
NYKHAYBNN		 PBM
Chang et al.(2013)
pTH7932 		0.898 0.898
e_gw1.87.73.1
M00726_2.00 		Physcomitrella patens
NNNRTDCDBN
NVHGHAYNNN		 PBM
Chang et al.(2013)
pTH8479 		0.841 0.841
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013213m EIN3 49 296

Links

Other EIN3 family TFs
Other Capsella rubella TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 1.000
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 1.000
EIN3 Arabidopsis thaliana AT3G20770 D 0.996
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.996
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.988
Bo5g106280 Brassica oleracea Bo5g106280 I 0.976
29708.m000185 Ricinus communis 29708.m000185 I 0.939
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.935
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.935
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.931
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.931
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.931
Bo1g108650 Brassica oleracea Bo1g108650 I 0.927
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.927
TCM_042022 Theobroma cacao TCM_042022 I 0.927
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.927
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.927
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.923
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.923
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.923
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.923
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.923
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.919
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.919
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.919
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.919
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.919
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.919
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.915
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.915
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.915
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.911
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.911
Ca_10236 Cicer arietinum Ca_10236 I 0.911
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.911
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.911
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.911
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.911
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.911
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.906
EIL1 Arabidopsis thaliana AT2G27050 D 0.898
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.898
Ca_07534 Cicer arietinum Ca_07534 I 0.898
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.898
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.898
Bra000528 Brassica rapa Bra000528 I 0.890
Bra001802 Brassica rapa Bra001802 I 0.890
mgf018950m Mimulus guttatus mgf018950m I 0.890
Bo3g076180 Brassica oleracea Bo3g076180 I 0.886
mgf015996m Mimulus guttatus mgf015996m I 0.886
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.886
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.886
Bo3g041690 Brassica oleracea Bo3g041690 I 0.882
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.882
Pm017009 Prunus mume Pm017009 I 0.882
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.882
MDP0000202831 Malus domestica MDP0000202831 I 0.882
PK13351.1 Cannabis sativa PK13351.1 I 0.882
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.878
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.878
PK01239.1 Cannabis sativa PK01239.1 I 0.878
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.874
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.874
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.874
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.870
MDP0000212881 Malus domestica MDP0000212881 I 0.870
MDP0000564884 Malus domestica MDP0000564884 I 0.870
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.866
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.866
MDP0000306498 Malus domestica MDP0000306498 I 0.866
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.866
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.862
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.862
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.862
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.858
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.858
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.854
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.854
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.841
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.829
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.829
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.821
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.817
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.813
mgf012394m Mimulus guttatus mgf012394m I 0.813
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.809
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.809
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.809
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.809
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.809
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.809
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.809
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.809
OS03G0324200 Oryza sativa OS03G0324200 I 0.809
OS03G0324300 Oryza sativa OS03G0324300 I 0.809
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.805
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.801
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.801
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.801
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I 0.801
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I 0.797
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.797
Si034616m.g Setaria italica Si034616m.g I 0.793
F775_28545 Aegilops tauschii F775_28545 I 0.789
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.789
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.789
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.789
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.789
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.785
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.781
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.776
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.776
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.776
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.776
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.776
OS07G0685700 Oryza sativa OS07G0685700 I 0.776
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.772
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.772
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.772
Si029213m.g Setaria italica Si029213m.g I 0.756
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.744
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.744
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.740
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.740
Pavir.J01001 Panicum virgatum Pavir.J01001 I 0.740
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.736
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.736
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.728
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.724
OBART07G26760 Oryza barthii OBART07G26760 I 0.724
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.721
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.715
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.715
PK19114.1 Cannabis sativa PK19114.1 I 0.715
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.711
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.711
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.711
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.711
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.709
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.707
SELMODRAFT_16064 Selaginella moellendorffii SELMODRAFT_16064 I 0.707
SELMODRAFT_16065 Selaginella moellendorffii SELMODRAFT_16065 I 0.707
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.707
Pm028171 Prunus mume Pm028171 I 0.707
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.707
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.704
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.703
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.703
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.703
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.703
30169.m006395 Ricinus communis 30169.m006395 I 0.703
MDP0000490180 Malus domestica MDP0000490180 I 0.703
MDP0000562585 Malus domestica MDP0000562585 I 0.703
MDP0000565880 Malus domestica MDP0000565880 I 0.703
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.703
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.703