CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene00379-v1.0-hybrid
(
Fragaria vesca
)
EIN3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04873 (EIN3)
IPR006957
gene00379-v1.0-hybrid
T175348_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q9ZWK1_TOBAC
M10470_2.00
Nicotiana tabacum
AGRTWCAT
ATGWAYCT
Transfac
Matys et al.(2006)
P$TEIL_01
0.870
0.870
EIL1
M00724_2.00
Arabidopsis thaliana
NNVRTDMRN
NYKHAYBNN
PBM
Chang et al.(2013)
pTH7932
0.862
0.862
EIN3
M00725_2.00
Arabidopsis thaliana
NNRTDHAYNN
NNRTDHAYNN
PBM
Chang et al.(2013)
pTH8729
0.862
0.862
EIN3
M06878_2.00
Arabidopsis thaliana
GDMYANRTWCAWTGH
DCAWTGWAYNTRKHC
Dap-seq
OMalley et al.(2016)
EIN3_col_a
0.862
0.862
EIN3
M06879_2.00
Arabidopsis thaliana
RCCGTTR
YAACGGY
Dap-seq
OMalley et al.(2016)
EIN3_colamp_a
0.862
0.862
e_gw1.87.73.1
M00726_2.00
Physcomitrella patens
NNNRTDCDBN
NVHGHAYNNN
PBM
Chang et al.(2013)
pTH8479
0.809
0.809
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna00379.1-v1.0-hybrid
EIN3
45
292
DELERRMWRDRILLKRLREQTRGKEAADNARQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLREWWKEKVRFDRNGPAAISKYQAENAIPGMMEDCISVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPQLNLAKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDINKIRKLVRQSKCLQDKMTAKESATWLAIINQEE
Links
Other
EIN3
family TFs
Other
Fragaria vesca
TFs
152 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm017009
Prunus mume
Pm017009
I
0.931
MDP0000306498
Malus domestica
MDP0000306498
I
0.923
MDP0000202831
Malus domestica
MDP0000202831
I
0.919
Aquca_014_00938
Aquilegia coerulea
Aquca_014_00938
I
0.911
Cucsa.364340
Cucumis sativus
Cucsa.364340
I
0.906
PRUPE_ppa003550mg
Prunus persica
PRUPE_ppa003550mg
I
0.902
VIT_13s0047g00250
Vitis vinifera
VIT_13s0047g00250
I
0.902
MDP0000212881
Malus domestica
MDP0000212881
I
0.902
MDP0000564884
Malus domestica
MDP0000564884
I
0.902
SapurV1A.0070s0670
Salix purpurea
SapurV1A.0070s0670
I
0.902
POPTR_0008s01200
Populus trichocarpa
POPTR_0008s01200
I
0.894
GLYMA14G04550
Glycine max
GLYMA14G04550
I
0.886
POPTR_0010s25370
Populus trichocarpa
POPTR_0010s25370
I
0.886
evm.TU.supercontig_103.60
Carica papaya
evm.TU.supercontig_103.60
I
0.886
SapurV1A.0036s0870
Salix purpurea
SapurV1A.0036s0870
I
0.886
PK01239.1
Cannabis sativa
PK01239.1
I
0.886
PK13351.1
Cannabis sativa
PK13351.1
I
0.886
Ciclev10000608m.g
Citrus clementina
Ciclev10000608m.g
I
0.882
Ciclev10000617m.g
Citrus clementina
Ciclev10000617m.g
I
0.882
orange1.1g007174m.g
Citrus sinensis
orange1.1g007174m.g
I
0.882
orange1.1g009144m.g
Citrus sinensis
orange1.1g009144m.g
I
0.882
POPTR_0004s20830
Populus trichocarpa
POPTR_0004s20830
I
0.878
cassava3620.m1
Manihot esculenta
cassava3620.m1
I
0.878
Eucgr.G02632
Eucalyptus grandis
Eucgr.G02632
I
0.878
chr2.CM0031.190.nc
Lotus japonicus
chr2.CM0031.190.nc
I
0.878
AMTR_s00119p00117410
Amborella trichopoda
AMTR_s00119p00117410
I
0.874
GLYMA02G44220
Glycine max
GLYMA02G44220
I
0.874
GLYMA13G03700
Glycine max
GLYMA13G03700
I
0.874
MTR_3g078770
Medicago truncatula
MTR_3g078770
I
0.874
TCM_042022
Theobroma cacao
TCM_042022
I
0.874
29708.m000185
Ricinus communis
29708.m000185
I
0.874
Ciclev10014617m.g
Citrus clementina
Ciclev10014617m.g
I
0.874
Gorai.009G105400
Gossypium raimondii
Gorai.009G105400
I
0.874
orange1.1g007017m.g
Citrus sinensis
orange1.1g007017m.g
I
0.874
GLYMA20G12250
Glycine max
GLYMA20G12250
I
0.870
POPTR_0009s16080
Populus trichocarpa
POPTR_0009s16080
I
0.870
SapurV1A.0615s0150
Salix purpurea
SapurV1A.0615s0150
I
0.870
EIL1
Arabidopsis lyrata
fgenesh2_kg.4__646__AT2G27050.1
I
0.866
MTR_5g087790
Medicago truncatula
MTR_5g087790
I
0.866
VIT_06s0009g01380
Vitis vinifera
VIT_06s0009g01380
I
0.866
Q9ZWK1_TOBAC
Nicotiana tabacum
Q9ZWK1_TOBAC
D
0.866
Eucgr.J00631
Eucalyptus grandis
Eucgr.J00631
I
0.866
gene25474-v1.0-hybrid
Fragaria vesca
gene25474-v1.0-hybrid
I
0.866
Gorai.003G140600
Gossypium raimondii
Gorai.003G140600
I
0.866
Gorai.013G266300
Gossypium raimondii
Gorai.013G266300
I
0.866
Thhalv10001938m.g
Eutrema salsugineum
Thhalv10001938m.g
I
0.866
EIN3
Arabidopsis thaliana
AT3G20770
D
0.862
Bra000528
Brassica rapa
Bra000528
I
0.862
PGSC0003DMG400008712
Solanum tuberosum
PGSC0003DMG400008712
I
0.862
Solyc01g009170.2
Solanum lycopersicum
Solyc01g009170.2
I
0.862
Solyc06g073720.1
Solanum lycopersicum
Solyc06g073720.1
I
0.862
Ca_10236
Cicer arietinum
Ca_10236
I
0.862
Cucsa.142750
Cucumis sativus
Cucsa.142750
I
0.862
mgf018950m
Mimulus guttatus
mgf018950m
I
0.862
Thhalv10020292m.g
Eutrema salsugineum
Thhalv10020292m.g
I
0.862
EIL1
Arabidopsis thaliana
AT2G27050
D
0.858
Bo3g041690
Brassica oleracea
Bo3g041690
I
0.858
EIN3
Arabidopsis lyrata
fgenesh2_kg.3__2304__AT3G20770.1
I
0.858
GLYMA13G03660
Glycine max
GLYMA13G03660
I
0.858
PGSC0003DMG400005915
Solanum tuberosum
PGSC0003DMG400005915
I
0.858
Bostr.19424s0573
Boechera stricta
Bostr.19424s0573
I
0.858
Cagra.2243s0007
Capsella grandiflora
Cagra.2243s0007
I
0.858
Cagra.6016s0001
Capsella grandiflora
Cagra.6016s0001
I
0.858
Carubv10013213m.g
Capsella rubella
Carubv10013213m.g
I
0.858
Carubv10022879m.g
Capsella rubella
Carubv10022879m.g
I
0.858
Gorai.004G227800
Gossypium raimondii
Gorai.004G227800
I
0.858
SapurV1A.0561s0140
Salix purpurea
SapurV1A.0561s0140
I
0.858
PGSC0003DMG400005914
Solanum tuberosum
PGSC0003DMG400005914
I
0.854
PGSC0003DMG400027507
Solanum tuberosum
PGSC0003DMG400027507
I
0.854
Solyc01g096810.2
Solanum lycopersicum
Solyc01g096810.2
I
0.854
Solyc06g073730.1
Solanum lycopersicum
Solyc06g073730.1
I
0.854
Ca_07534
Cicer arietinum
Ca_07534
I
0.854
Bo5g106280
Brassica oleracea
Bo5g106280
I
0.847
PRUPE_ppa003493mg
Prunus persica
PRUPE_ppa003493mg
I
0.846
mgf015996m
Mimulus guttatus
mgf015996m
I
0.846
Bostr.29505s0037
Boechera stricta
Bostr.29505s0037
I
0.846
Bo1g108650
Brassica oleracea
Bo1g108650
I
0.837
GSMUA_Achr6G15930_001
Musa acuminata
GSMUA_Achr6G15930_001
I
0.837
LPERR03G13760
Leersia perrieri
LPERR03G13760
I
0.825
Sb01g036740
Sorghum bicolor
Sb01g036740
I
0.825
evm.TU.supercontig_54.30
Carica papaya
evm.TU.supercontig_54.30
I
0.825
Pavir.Ia03450
Panicum virgatum
Pavir.Ia03450
I
0.825
GRMZM2G317584
Zea mays
GRMZM2G317584
I
0.821
GSMUA_Achr10G12800_001
Musa acuminata
GSMUA_Achr10G12800_001
I
0.821
GSMUA_Achr5G27670_001
Musa acuminata
GSMUA_Achr5G27670_001
I
0.821
Pavir.Ib01512
Panicum virgatum
Pavir.Ib01512
I
0.821
BRADI1G63780
Brachypodium distachyon
BRADI1G63780
I
0.817
GSMUA_Achr8G21550_001
Musa acuminata
GSMUA_Achr8G21550_001
I
0.817
Si034616m.g
Setaria italica
Si034616m.g
I
0.817
Traes_4DL_C083C804E
Triticum aestivum
Traes_4DL_C083C804E
I
0.817
e_gw1.11.194.1
Physcomitrella patens
e_gw1.11.194.1
I
0.817
mgf012394m
Mimulus guttatus
mgf012394m
I
0.817
Bra001802
Brassica rapa
Bra001802
I
0.815
BGIOSGA012535
Oryza indica
BGIOSGA012535
I
0.813
Bo3g076180
Brassica oleracea
Bo3g076180
I
0.813
GSMUA_Achr2G11540_001
Musa acuminata
GSMUA_Achr2G11540_001
I
0.813
OGLUM03G15860
Oryza glumaepatula
OGLUM03G15860
I
0.813
OMERI03G14140
Oryza meridionalis
OMERI03G14140
I
0.813
ONIVA03G16680
Oryza nivara
ONIVA03G16680
I
0.813
OPUNC03G15240
Oryza punctata
OPUNC03G15240
I
0.813
ORGLA03G0150600
Oryza glaberrima
ORGLA03G0150600
I
0.813
ORUFI03G16290
Oryza rufipogon
ORUFI03G16290
I
0.813
GRMZM2G033570
Zea mays
GRMZM2G033570
I
0.809
e_gw1.87.73.1
Physcomitrella patens
e_gw1.87.73.1
D
0.809
F775_28545
Aegilops tauschii
F775_28545
I
0.801
MLOC_14619
Hordeum vulgare
MLOC_14619
I
0.801
Traes_4AS_2BDA1260C
Triticum aestivum
Traes_4AS_2BDA1260C
I
0.801
OS03G0324200
Oryza sativa
OS03G0324200
I
0.797
OS03G0324300
Oryza sativa
OS03G0324300
I
0.797
GSMUA_Achr9G17080_001
Musa acuminata
GSMUA_Achr9G17080_001
I
0.793
OMERI07G23380
Oryza meridionalis
OMERI07G23380
I
0.789
OPUNC07G25150
Oryza punctata
OPUNC07G25150
I
0.789
BGIOSGA023694
Oryza indica
BGIOSGA023694
I
0.785
ONIVA07G26490
Oryza nivara
ONIVA07G26490
I
0.785
ORGLA07G0211700
Oryza glaberrima
ORGLA07G0211700
I
0.785
ORUFI07G27710
Oryza rufipogon
ORUFI07G27710
I
0.785
OS07G0685700
Oryza sativa
OS07G0685700
I
0.785
SELMODRAFT_112063
Selaginella moellendorffii
SELMODRAFT_112063
I
0.784
SELMODRAFT_136229
Selaginella moellendorffii
SELMODRAFT_136229
I
0.784
GSMUA_Achr11G25120_001
Musa acuminata
GSMUA_Achr11G25120_001
I
0.752
GSMUA_Achr3G09440_001
Musa acuminata
GSMUA_Achr3G09440_001
I
0.748
GRMZM2G151811
Zea mays
GRMZM2G151811
I
0.740
OBART07G26760
Oryza barthii
OBART07G26760
I
0.740
GRMZM2G003558
Zea mays
GRMZM2G003558
I
0.732
LPERR07G23570
Leersia perrieri
LPERR07G23570
I
0.732
Pavir.Bb03705
Panicum virgatum
Pavir.Bb03705
I
0.732
Pavir.J01001
Panicum virgatum
Pavir.J01001
I
0.732
Si029213m.g
Setaria italica
Si029213m.g
I
0.729
AMTR_s00022p00216890
Amborella trichopoda
AMTR_s00022p00216890
I
0.728
MTR_2g098470
Medicago truncatula
MTR_2g098470
I
0.724
POPTR_0001s05360
Populus trichocarpa
POPTR_0001s05360
I
0.724
Sb02g043350
Sorghum bicolor
Sb02g043350
I
0.720
chr3.LjB09K03.50.nc
Lotus japonicus
chr3.LjB09K03.50.nc
I
0.720
GLYMA13G41751
Glycine max
GLYMA13G41751
I
0.717
Traes_2BS_647C82888
Triticum aestivum
Traes_2BS_647C82888
I
0.715
PRUPE_ppa003113mg
Prunus persica
PRUPE_ppa003113mg
I
0.711
Pm028171
Prunus mume
Pm028171
I
0.711
30169.m006395
Ricinus communis
30169.m006395
I
0.711
MDP0000562585
Malus domestica
MDP0000562585
I
0.711
MDP0000565880
Malus domestica
MDP0000565880
I
0.711
SapurV1A.0850s0030
Salix purpurea
SapurV1A.0850s0030
I
0.711
GLYMA15G03650
Glycine max
GLYMA15G03650
I
0.709
Eucgr.B03664
Eucalyptus grandis
Eucgr.B03664
I
0.709
PGSC0003DMG400029908
Solanum tuberosum
PGSC0003DMG400029908
I
0.707
Solyc01g014480.2
Solanum lycopersicum
Solyc01g014480.2
I
0.707
Traes_4BL_F34EBD618
Triticum aestivum
Traes_4BL_F34EBD618
I
0.707
EIL3
Vitis vinifera
VIT_06s0004g01610
I
0.707
Ca_02669
Cicer arietinum
Ca_02669
I
0.703
Ciclev10015261m.g
Citrus clementina
Ciclev10015261m.g
I
0.703
MDP0000490180
Malus domestica
MDP0000490180
I
0.703
orange1.1g007662m.g
Citrus sinensis
orange1.1g007662m.g
I
0.703
PK19114.1
Cannabis sativa
PK19114.1
I
0.703