Pavir.J01001 (Panicum virgatum)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04873 (EIN3) IPR006957 Pavir.J01001 T175399_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EIN3
M00725_2.00 		Arabidopsis thaliana
NNRTDHAYNN
NNRTDHAYNN		 PBM
Chang et al.(2013)
pTH8729 		0.789 0.789
EIN3
M06878_2.00 		Arabidopsis thaliana
GDMYANRTWCAWTGH
DCAWTGWAYNTRKHC		 Dap-seq
OMalley et al.(2016)
EIN3_col_a 		0.789 0.789
EIN3
M06879_2.00 		Arabidopsis thaliana
RCCGTTR
YAACGGY		 Dap-seq
OMalley et al.(2016)
EIN3_colamp_a 		0.789 0.789
Q9ZWK1_TOBAC
M10470_2.00 		Nicotiana tabacum
AGRTWCAT
ATGWAYCT		 Transfac
Matys et al.(2006)
P$TEIL_01 		0.784 0.784
EIL1
M00724_2.00 		Arabidopsis thaliana
NNVRTDMRN
NYKHAYBNN		 PBM
Chang et al.(2013)
pTH7932 		0.772 0.772
e_gw1.87.73.1
M00726_2.00 		Physcomitrella patens
NNNRTDCDBN
NVHGHAYNNN		 PBM
Chang et al.(2013)
pTH8479 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01001.1.p EIN3 64 297

Links

Other EIN3 family TFs
Other Panicum virgatum TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_30860 Triticum urartu TRIUR3_30860 I 0.974
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.871
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.871
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.871
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.871
OS07G0685700 Oryza sativa OS07G0685700 I 0.871
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.844
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.837
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.835
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.828
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.823
Si029213m.g Setaria italica Si029213m.g I 0.813
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.810
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.809
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.806
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.803
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.802
OBART07G26760 Oryza barthii OBART07G26760 I 0.800
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.797
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.793
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.793
29708.m000185 Ricinus communis 29708.m000185 I 0.793
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.789
OB07G32250 Oryza brachyantha OB07G32250 I 0.787
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.781
Bo3g076180 Brassica oleracea Bo3g076180 I 0.772
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.762
OMERI05G02190 Oryza meridionalis OMERI05G02190 I 0.758
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.752
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.752
TCM_042022 Theobroma cacao TCM_042022 I 0.752
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.752
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.752
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.752
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.749
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.749
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.749
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.749
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.749
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.749
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.749
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.749
OS03G0324200 Oryza sativa OS03G0324200 I 0.749
OS03G0324300 Oryza sativa OS03G0324300 I 0.749
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.748
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.748
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.748
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.748
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.748
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.748
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.748
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.748
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.748
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.748
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.746
SELMODRAFT_419770 Selaginella moellendorffii SELMODRAFT_419770 I 0.746
F775_28545 Aegilops tauschii F775_28545 I 0.745
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.745
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.745
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.745
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.745
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.745
EIN3 Arabidopsis thaliana AT3G20770 D 0.744
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.744
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.744
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.744
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.744
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.744
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.742
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.742
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.741
Si034616m.g Setaria italica Si034616m.g I 0.741
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.741
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.740
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.740
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.740
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.740
Ca_10236 Cicer arietinum Ca_10236 I 0.740
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.740
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.740
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.740
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.740
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.740
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.740
PK01239.1 Cannabis sativa PK01239.1 I 0.740
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.737
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.736
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.736
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.736
Ca_07534 Cicer arietinum Ca_07534 I 0.736
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.736
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.736
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.736
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.736
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.734
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.733
LjSGA_067101.1 Lotus japonicus LjSGA_067101.1 I 0.733
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.732
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.732
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.732
MDP0000306498 Malus domestica MDP0000306498 I 0.732
Bra000528 Brassica rapa Bra000528 I 0.730
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.728
Pm017009 Prunus mume Pm017009 I 0.728
MDP0000202831 Malus domestica MDP0000202831 I 0.728
PK13351.1 Cannabis sativa PK13351.1 I 0.728
Bo3g041690 Brassica oleracea Bo3g041690 I 0.726
Bo5g106280 Brassica oleracea Bo5g106280 I 0.726
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.726
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.726
EIL1 Arabidopsis thaliana AT2G27050 D 0.725
Bo1g108650 Brassica oleracea Bo1g108650 I 0.725
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.724
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.724
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.724
MDP0000212881 Malus domestica MDP0000212881 I 0.724
MDP0000564884 Malus domestica MDP0000564884 I 0.724
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.722
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.720
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.720
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.720
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.717
Bra001802 Brassica rapa Bra001802 I 0.715
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.713
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.711
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.707
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.705
mgf015996m Mimulus guttatus mgf015996m I 0.705
mgf018950m Mimulus guttatus mgf018950m I 0.705
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.705