CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA20G26810
(
Glycine max
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03101 (FAR1)
IPR004330
GLYMA20G26810
T179493_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.875
0.875
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.875
0.875
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA20G26810.1
FAR1
48
135
SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELVP
GLYMA20G26810.2
FAR1
48
135
SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELVP
Links
Other
FAR1
family TFs
Other
Glycine max
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
FAR1
Arabidopsis thaliana
AT4G15090
D
0.856
Bostr.0597s0142
Boechera stricta
Bostr.0597s0142
I
0.878
Bo6g054750
Brassica oleracea
Bo6g054750
I
0.856
Bra040696
Brassica rapa
Bra040696
I
0.856
PK08903.1
Cannabis sativa
PK08903.1
I
0.705
PK04639.1
Cannabis sativa
PK04639.1
I
0.932
Cagra.1850s0019
Capsella grandiflora
Cagra.1850s0019
I
0.899
Carubv10012703m.g
Capsella rubella
Carubv10012703m.g
I
0.899
Carubv10004178m.g
Capsella rubella
Carubv10004178m.g
I
0.899
evm.TU.supercontig_8.288
Carica papaya
evm.TU.supercontig_8.288
I
0.727
Cucsa.180090
Cucumis sativus
Cucsa.180090
I
0.898
Eucgr.C04090
Eucalyptus grandis
Eucgr.C04090
I
0.909
Thhalv10024410m.g
Eutrema salsugineum
Thhalv10024410m.g
I
0.920
gene24215-v1.0-hybrid
Fragaria vesca
gene24215-v1.0-hybrid
I
0.932
GLYMA04G14850
Glycine max
GLYMA04G14850
I
0.700
GLYMA06G47210
Glycine max
GLYMA06G47210
I
0.700
GLYMA10G40510
Glycine max
GLYMA10G40510
I
0.989
Gorai.007G173400
Gossypium raimondii
Gorai.007G173400
I
0.920
Gorai.005G134200
Gossypium raimondii
Gorai.005G134200
I
0.700
MDP0000286803
Malus domestica
MDP0000286803
I
0.716
cassava31125.valid.m1
Manihot esculenta
cassava31125.valid.m1
I
0.705
cassava31126.valid.m1
Manihot esculenta
cassava31126.valid.m1
I
0.705
cassava31127.valid.m1
Manihot esculenta
cassava31127.valid.m1
I
0.705
cassava31128.valid.m1
Manihot esculenta
cassava31128.valid.m1
I
0.705
cassava24584.valid.m1
Manihot esculenta
cassava24584.valid.m1
I
0.898
mgf008053m
Mimulus guttatus
mgf008053m
I
0.898
POPTR_0006s02140
Populus trichocarpa
POPTR_0006s02140
I
0.898
Pm014858
Prunus mume
Pm014858
I
0.920
Pm014859
Prunus mume
Pm014859
I
0.700
PRUPE_ppa001511mg
Prunus persica
PRUPE_ppa001511mg
I
0.920
PRUPE_ppa001344mg
Prunus persica
PRUPE_ppa001344mg
I
0.700
30106.m000672
Ricinus communis
30106.m000672
I
0.898
SapurV1A.0767s0090
Salix purpurea
SapurV1A.0767s0090
I
0.909
SapurV1A.0767s0100
Salix purpurea
SapurV1A.0767s0100
I
0.808
Solyc08g060840.1
Solanum lycopersicum
Solyc08g060840.1
I
0.875
TCM_013043
Theobroma cacao
TCM_013043
I
0.769
TCM_002030
Theobroma cacao
TCM_002030
I
0.909
FHY3
Vitis vinifera
VIT_03s0017g01780
I
0.705
FAR1
Vitis vinifera
VIT_03s0017g01810
I
0.921