CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_013043
(
Theobroma cacao
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03101 (FAR1)
IPR004330
TCM_013043
T180493_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.889
0.889
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.889
0.889
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.846
0.846
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.846
0.846
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY21467
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21468
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21469
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21470
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21471
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21472
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21473
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21474
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21475
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21476
FAR1
11
113
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
Links
Other
FAR1
family TFs
Other
Theobroma cacao
TFs
85 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.005G134200
Gossypium raimondii
Gorai.005G134200
I
0.967
SapurV1A.0767s0100
Salix purpurea
SapurV1A.0767s0100
I
0.967
cassava31125.valid.m1
Manihot esculenta
cassava31125.valid.m1
I
0.962
cassava31126.valid.m1
Manihot esculenta
cassava31126.valid.m1
I
0.962
cassava31127.valid.m1
Manihot esculenta
cassava31127.valid.m1
I
0.962
cassava31128.valid.m1
Manihot esculenta
cassava31128.valid.m1
I
0.962
GLYMA04G14850
Glycine max
GLYMA04G14850
I
0.956
GLYMA06G47210
Glycine max
GLYMA06G47210
I
0.956
POPTR_0006s02150
Populus trichocarpa
POPTR_0006s02150
I
0.956
PRUPE_ppa001344mg
Prunus persica
PRUPE_ppa001344mg
I
0.956
Pm014859
Prunus mume
Pm014859
I
0.956
evm.TU.supercontig_8.288
Carica papaya
evm.TU.supercontig_8.288
I
0.956
MDP0000286803
Malus domestica
MDP0000286803
I
0.956
PK08903.1
Cannabis sativa
PK08903.1
I
0.956
POPTR_0016s01980
Populus trichocarpa
POPTR_0016s01980
I
0.944
FHY3
Vitis vinifera
VIT_03s0017g01780
I
0.933
SapurV1A.0154s0240
Salix purpurea
SapurV1A.0154s0240
I
0.933
FHY3
Arabidopsis thaliana
AT3G22170
D
0.923
Cucsa.180080
Cucumis sativus
Cucsa.180080
I
0.923
Bostr.19424s0443
Boechera stricta
Bostr.19424s0443
I
0.923
Cagra.2420s0008
Capsella grandiflora
Cagra.2420s0008
I
0.923
Carubv10013009m.g
Capsella rubella
Carubv10013009m.g
I
0.923
Thhalv10018262m.g
Eutrema salsugineum
Thhalv10018262m.g
N
0.923
Thhalv10020053m.g
Eutrema salsugineum
Thhalv10020053m.g
I
0.923
Eucgr.A00908
Eucalyptus grandis
Eucgr.A00908
I
0.922
gene24214-v1.0-hybrid
Fragaria vesca
gene24214-v1.0-hybrid
I
0.922
Solyc07g043270.2
Solanum lycopersicum
Solyc07g043270.2
I
0.889
FRS4
Arabidopsis thaliana
AT1G76320
N
0.885
Bo6g120360
Brassica oleracea
Bo6g120360
N
0.885
GLYMA13G41660
Glycine max
GLYMA13G41660
N
0.885
GLYMA15G03750
Glycine max
GLYMA15G03750
N
0.885
TCM_002030
Theobroma cacao
TCM_002030
I
0.885
Ca_02661
Cicer arietinum
Ca_02661
N
0.885
30106.m000672
Ricinus communis
30106.m000672
I
0.885
Bostr.20129s0070
Boechera stricta
Bostr.20129s0070
N
0.885
Cagra.0799s0103
Capsella grandiflora
Cagra.0799s0103
N
0.885
Carubv10019871m.g
Capsella rubella
Carubv10019871m.g
N
0.885
Eucgr.B03670
Eucalyptus grandis
Eucgr.B03670
N
0.885
Gorai.007G173400
Gossypium raimondii
Gorai.007G173400
I
0.885
mgf009829m
Mimulus guttatus
mgf009829m
I
0.856
mgf014333m
Mimulus guttatus
mgf014333m
I
0.856
Bra031330
Brassica rapa
Bra031330
I
0.846
PRUPE_ppa001996mg
Prunus persica
PRUPE_ppa001996mg
N
0.846
FAR1
Vitis vinifera
VIT_03s0017g01810
I
0.846
Pm019586
Prunus mume
Pm019586
N
0.846
cassava24584.valid.m1
Manihot esculenta
cassava24584.valid.m1
I
0.846
mgf008660m
Mimulus guttatus
mgf008660m
N
0.846
Gorai.009G072000
Gossypium raimondii
Gorai.009G072000
N
0.846
Bo5g098280
Brassica oleracea
Bo5g098280
I
0.833
Bo1g105420
Brassica oleracea
Bo1g105420
I
0.808
GLYMA10G40510
Glycine max
GLYMA10G40510
I
0.808
POPTR_0003s22300
Populus trichocarpa
POPTR_0003s22300
N
0.808
PRUPE_ppa001511mg
Prunus persica
PRUPE_ppa001511mg
I
0.808
TCM_040565
Theobroma cacao
TCM_040565
N
0.808
Pm014858
Prunus mume
Pm014858
I
0.808
cassava38027.valid.m1
Manihot esculenta
cassava38027.valid.m1
N
0.808
Bostr.0597s0142
Boechera stricta
Bostr.0597s0142
I
0.808
Eucgr.C04090
Eucalyptus grandis
Eucgr.C04090
I
0.808
gene12562-v1.0-hybrid
Fragaria vesca
gene12562-v1.0-hybrid
N
0.808
gene24215-v1.0-hybrid
Fragaria vesca
gene24215-v1.0-hybrid
I
0.808
MDP0000267783
Malus domestica
MDP0000267783
N
0.808
SapurV1A.0009s0410
Salix purpurea
SapurV1A.0009s0410
N
0.808
Thhalv10024410m.g
Eutrema salsugineum
Thhalv10024410m.g
I
0.808
PK04639.1
Cannabis sativa
PK04639.1
I
0.808
GLYMA20G26810
Glycine max
GLYMA20G26810
I
0.769
FRS1
Populus trichocarpa
POPTR_0003s10970
N
0.769
Cucsa.180090
Cucumis sativus
Cucsa.180090
I
0.769
Cagra.1850s0019
Capsella grandiflora
Cagra.1850s0019
I
0.769
Carubv10004178m.g
Capsella rubella
Carubv10004178m.g
I
0.769
Carubv10012703m.g
Capsella rubella
Carubv10012703m.g
I
0.769
Gorai.001G213700
Gossypium raimondii
Gorai.001G213700
N
0.769
PK07805.1
Cannabis sativa
PK07805.1
N
0.769
SapurV1A.0767s0090
Salix purpurea
SapurV1A.0767s0090
I
0.750
POPTR_0006s02140
Populus trichocarpa
POPTR_0006s02140
I
0.739
PRUPE_ppa024183mg
Prunus persica
PRUPE_ppa024183mg
N
0.731
Solyc02g068550.1
Solanum lycopersicum
Solyc02g068550.1
N
0.731
Solyc03g121630.2
Solanum lycopersicum
Solyc03g121630.2
N
0.731
Solyc08g060840.1
Solanum lycopersicum
Solyc08g060840.1
I
0.731
TCM_002031
Theobroma cacao
TCM_002031
N
0.731
FRS2
Vitis vinifera
VIT_03s0017g01830
N
0.731
Pm014857
Prunus mume
Pm014857
N
0.731
Cucsa.048930
Cucumis sativus
Cucsa.048930
N
0.731
Eucgr.D00033
Eucalyptus grandis
Eucgr.D00033
N
0.731
SapurV1A.0325s0180
Salix purpurea
SapurV1A.0325s0180
N
0.731