CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1850s0019
(
Capsella grandiflora
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03101 (FAR1)
IPR004330
Cagra.1850s0019
T181253_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.933
0.933
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.933
0.933
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1850s0019.1.p
FAR1
65
153
LFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESGSSSRRSSVKKTDCKASMHVKRRADGKWIIHEFIKDHNHELLP
Links
Other
FAR1
family TFs
Other
Capsella grandiflora
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10004178m.g
Capsella rubella
Carubv10004178m.g
I
1.000
Carubv10012703m.g
Capsella rubella
Carubv10012703m.g
I
1.000
Thhalv10024410m.g
Eutrema salsugineum
Thhalv10024410m.g
I
0.966
Bostr.0597s0142
Boechera stricta
Bostr.0597s0142
I
0.955
Eucgr.C04090
Eucalyptus grandis
Eucgr.C04090
I
0.933
FAR1
Arabidopsis thaliana
AT4G15090
D
0.922
FAR1
Vitis vinifera
VIT_03s0017g01810
I
0.921
Cucsa.180090
Cucumis sativus
Cucsa.180090
I
0.921
gene24215-v1.0-hybrid
Fragaria vesca
gene24215-v1.0-hybrid
I
0.921
POPTR_0006s02140
Populus trichocarpa
POPTR_0006s02140
I
0.920
GLYMA10G40510
Glycine max
GLYMA10G40510
I
0.910
PRUPE_ppa001511mg
Prunus persica
PRUPE_ppa001511mg
I
0.910
TCM_002030
Theobroma cacao
TCM_002030
I
0.910
Pm014858
Prunus mume
Pm014858
I
0.910
Gorai.007G173400
Gossypium raimondii
Gorai.007G173400
I
0.910
PK04639.1
Cannabis sativa
PK04639.1
I
0.910
SapurV1A.0767s0090
Salix purpurea
SapurV1A.0767s0090
I
0.909
GLYMA20G26810
Glycine max
GLYMA20G26810
I
0.899
Bo6g054750
Brassica oleracea
Bo6g054750
I
0.889
Bra040696
Brassica rapa
Bra040696
I
0.889
30106.m000672
Ricinus communis
30106.m000672
I
0.888
cassava24584.valid.m1
Manihot esculenta
cassava24584.valid.m1
I
0.888
mgf008053m
Mimulus guttatus
mgf008053m
I
0.886
Solyc08g060840.1
Solanum lycopersicum
Solyc08g060840.1
I
0.865
SapurV1A.0767s0100
Salix purpurea
SapurV1A.0767s0100
I
0.808
TCM_013043
Theobroma cacao
TCM_013043
I
0.769
GLYMA04G14850
Glycine max
GLYMA04G14850
I
0.708
GLYMA06G47210
Glycine max
GLYMA06G47210
I
0.708
Solyc07g043270.2
Solanum lycopersicum
Solyc07g043270.2
I
0.708
Cucsa.180080
Cucumis sativus
Cucsa.180080
I
0.708