CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Aa01402
(
Panicum virgatum
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03101 (FAR1)
IPR004330
Pavir.Aa01402
T181656_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Aa01402.1.p
FAR1
53
137
RFYRKYARRVGFGVSVRRSSFSQEGTCLYLELMCCKGGRPRYEPKFRKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVSP
Pavir.Aa01402.2.p
FAR1
53
137
RFYRKYARRVGFGVSVRRSSFSQEGTCLYLELMCCKGGRPRYEPKFRKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVSP
Pavir.Aa01402.3.p
FAR1
40
124
RFYRKYARRVGFGVSVRRSSFSQEGTCLYLELMCCKGGRPRYEPKFRKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVSP
Links
Other
FAR1
family TFs
Other
Panicum virgatum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb04g025530
Sorghum bicolor
Sb04g025530
N
1.000
BGIOSGA008595
Oryza indica
BGIOSGA008595
N
0.988
OB0054G10030
Oryza brachyantha
OB0054G10030
N
0.988
ORGLA02G0203500
Oryza glaberrima
ORGLA02G0203500
N
0.988
OS02G0608300
Oryza sativa
OS02G0608300
N
0.988
Si005823m.g
Setaria italica
Si005823m.g
N
0.988
BRADI3G48330
Brachypodium distachyon
BRADI3G48330
N
0.976
Pavir.Ab02190
Panicum virgatum
Pavir.Ab02190
N
0.976
MLOC_3334
Hordeum vulgare
MLOC_3334
N
0.965
Traes_6AL_1DC1EF368
Triticum aestivum
Traes_6AL_1DC1EF368
N
0.965
Traes_6BL_3A98C155D
Triticum aestivum
Traes_6BL_3A98C155D
N
0.965
Traes_6DL_FDED400C4
Triticum aestivum
Traes_6DL_FDED400C4
N
0.965
TRIUR3_25572
Triticum urartu
TRIUR3_25572
N
0.965
GRMZM2G106653
Zea mays
GRMZM2G106653
N
0.953