CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g120142
(
Nematostella vectensis
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
NEMVEDRAFT_v1g120142
T188172_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPU_007644
M01987_2.00
Strongylocentrotus purpuratus
NNHHAYDNN
NNHRTDDNN
PBM
Weirauch et al.(2014)
pTH6497
0.742
0.838
Foxj3
M00160_2.00
Mus musculus
NRTAAACAHN
NDTGTTTAYN
PBM
Badis et al.(2009)
Foxj3_0982
0.720
0.825
Foxj3
M01981_2.00
Mus musculus
VNHHAYANN
NNTRTDDNB
PBM
Weirauch et al.(2014)
pTH6591
0.720
0.825
FOXJ3
M03046_2.00
Homo sapiens
RTAAAVAA
TTBTTTAY
SELEX
Jolma et al.(2013)
FOXJ3_1
0.720
0.825
FOXJ3
M03047_2.00
Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_2
0.720
0.825
FOXJ3
M03048_2.00
Homo sapiens
GTAAACATAAACA
TGTTTATGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_3
0.720
0.825
Foxj3
M03055_2.00
Mus musculus
ACGGACACAAT
ATTGTGTCCGT
SELEX
Jolma et al.(2013)
Foxj3_1
0.720
0.825
Foxj3
M03056_2.00
Mus musculus
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
Foxj3_2
0.720
0.825
Foxj3
M03057_2.00
Mus musculus
RTAAACAW
WTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_3
0.720
0.825
Foxj3
M03058_2.00
Mus musculus
RTAAACAWAAACA
TGTTTWTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_4
0.720
0.825
FOXJ3
M02736_2.00
Homo sapiens
AAACAATAAACA
TGTTTATTGTTT
SELEX
Jolma et al.(2010)
FOXJ3_dimer
0.720
0.825
FOXJ3
M02737_2.00
Homo sapiens
RTAAACAW
WTGTTTAY
SELEX
Jolma et al.(2010)
FOXJ3_monomer
0.720
0.825
FOXJ3
M04859_2.00
Homo sapiens
DYGTMAACAH
DTGTTKACRH
SELEX
Yin et al.(2017)
FOXJ3_eDBD_HT-SELEX
0.720
0.825
FOXJ3
M09098_2.00
Homo sapiens
WAAMMATAAACAN
NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_HUMAN.H11MO.0.A
0.720
0.825
Foxj3
M09102_2.00
Mus musculus
WAAMMATAAACAN
NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_MOUSE.H11MO.0.A
0.720
0.825
FOXJ3
M04860_2.00
Homo sapiens
RYGTMAACAH
DTGTTKACRY
SELEX
Yin et al.(2017)
FOXJ3_eDBD_Methyl-HT-SELEX
0.720
0.825
Foxj2
M00790_2.00
Mus musculus
VHMAAYANN
NNTRTTKDB
PBM
Weirauch et al.(2013)
pTH3043
0.698
0.762
Foxj2
M01980_2.00
Mus musculus
RTAAACAN
NTGTTTAY
PBM
Weirauch et al.(2014)
pTH6638
0.698
0.762
FOXJ2
M03016_2.00
Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ2_1
0.698
0.762
FOXJ2
M03017_2.00
Homo sapiens
RTAAACAH
DTGTTTAY
SELEX
Jolma et al.(2013)
FOXJ2_2
0.698
0.762
FOXJ2
M03018_2.00
Homo sapiens
GTAAACAWMAACA
TGTTKWTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ2_3
0.698
0.762
FOXJ2
M04809_2.00
Homo sapiens
NTRTTTACAAYANN
NNTRTTGTAAAYAN
SELEX
Yin et al.(2017)
FOXJ2_eDBD_HT-SELEX
0.698
0.762
FOXJ2
M09084_2.00
Homo sapiens
WARAYAAAYA
TRTTTRTYTW
Misc
Kulakovskiy et al.(2013)
FOXJ2_HUMAN.H11MO.0.C
0.698
0.762
Foxj2
M09100_2.00
Mus musculus
WARAYAAAYA
TRTTTRTYTW
Misc
Kulakovskiy et al.(2013)
FOXJ2_MOUSE.H11MO.0.C
0.698
0.762
FOXJ2
M10527_2.00
Homo sapiens
HHNHMRAYAAAYANHNND
HNNDNTRTTTRTYKDNDD
Transfac
Matys et al.(2006)
V$FOXJ2_01
0.698
0.762
FOXJ2
M10528_2.00
Homo sapiens
VYMAYAATATTTKN
NMAAATATTRTKRB
Transfac
Matys et al.(2006)
V$FOXJ2_02
0.698
0.762
FOXJ2
M04810_2.00
Homo sapiens
NTRTTTACAAYANN
NNTRTTGTAAAYAN
SELEX
Yin et al.(2017)
FOXJ2_eDBD_Methyl-HT-SELEX
0.698
0.762
Foxo4
M00794_2.00
Mus musculus
NNRWMAAYAN
NTRTTKWYNN
PBM
Weirauch et al.(2013)
pTH3731
0.669
0.475
Foxo4
M09107_2.00
Mus musculus
MVWAAACAA
TTGTTTWBK
Misc
Kulakovskiy et al.(2013)
FOXO4_MOUSE.H11MO.0.C
0.669
0.475
daf-16
M01989_2.00
Caenorhabditis elegans
NNRWMAAYAN
NTRTTKWYNN
PBM
Weirauch et al.(2014)
pTH8995
0.666
0.412
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO36306
Forkhead
73
153
KPPYSYANLITFAINSSPEKKMTLSEIYQWICDHFPYYKEAGNGWKNSIRHNLSLNKCFIKVPRSKDDPGKVYIRYTLRIN
Links
Other
Forkhead
family TFs
Other
Nematostella vectensis
TFs
349 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm001671
Prunus mume
Pm001671
N
SapurV1A.3860s0010
Salix purpurea
SapurV1A.3860s0010
N
SapurV1A.1951s0040
Salix purpurea
SapurV1A.1951s0040
N
SapurV1A.1066s0010
Salix purpurea
SapurV1A.1066s0010
N
SapurV1A.0977s0060
Salix purpurea
SapurV1A.0977s0060
N
orange1.1g025739m.g
Citrus sinensis
orange1.1g025739m.g
N
Gorai.013G266400
Gossypium raimondii
Gorai.013G266400
N
evm.TU.supercontig_34.221
Carica papaya
evm.TU.supercontig_34.221
N
Eucgr.J00637
Eucalyptus grandis
Eucgr.J00637
N
Ciclev10016383m.g
Citrus clementina
Ciclev10016383m.g
N
mgf016309m
Mimulus guttatus
mgf016309m
N
Cucsa.142580
Cucumis sativus
Cucsa.142580
N
30089.m001012
Ricinus communis
30089.m001012
N
GLYMA13G03880
Glycine max
GLYMA13G03880
N
Cla011265
Citrullus lanatus
Cla011265
N
Ca_10228
Cicer arietinum
Ca_10228
N
VIT_06s0009g01790
Vitis vinifera
VIT_06s0009g01790
N
TCM_042034
Theobroma cacao
TCM_042034
N
Solyc01g008980.2
Solanum lycopersicum
Solyc01g008980.2
N
PRUPE_ppa022266mg
Prunus persica
PRUPE_ppa022266mg
N
POPTR_0009s02360
Populus trichocarpa
POPTR_0009s02360
N
POPTR_0001s22790
Populus trichocarpa
POPTR_0001s22790
N
PGSC0003DMG400022706
Solanum tuberosum
PGSC0003DMG400022706
N
MTR_5g088230
Medicago truncatula
MTR_5g088230
N
GLYMA20G10600
Glycine max
GLYMA20G10600
N