CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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foxi4.2.S
(
Xenopus laevis
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
XB-GENE-865722
T189739_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
foxi4.2.S
M10576_2.00
Xenopus laevis
WNWATAAACAWNNR
YNNWTGTTTATWNW
Transfac
Matys et al.(2006)
V$XFD2_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FOXI1
M03026_2.00
Homo sapiens
GTAAACA
TGTTTAC
SELEX
Jolma et al.(2013)
FOXI1_1
0.710
0.884
FOXI1
M03027_2.00
Homo sapiens
RTGTKTACGGTAAACAA
TTGTTTACCGTAMACAY
SELEX
Jolma et al.(2013)
FOXI1_2
0.710
0.884
FOXI1
M04827_2.00
Homo sapiens
NNNNNRTMAACAN
NTGTTKAYNNNNN
SELEX
Yin et al.(2017)
FOXI1_eDBD_HT-SELEX
0.710
0.884
FOXI1
M04829_2.00
Homo sapiens
AAYGTAAACAMW
WKTGTTTACRTT
SELEX
Yin et al.(2017)
FOXI1_FL_HT-SELEX
0.710
0.884
FOXI1
M09095_2.00
Homo sapiens
RRCCAATCAVAD
HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_HUMAN.H11MO.0.B
0.710
0.884
FOXI1
M10556_2.00
Homo sapiens
HAWAYAAAYAHVH
DBDTRTTTRTWTD
Transfac
Matys et al.(2006)
V$HFH3_01
0.710
0.884
FOXI1
M04828_2.00
Homo sapiens
NWWVHRTAAACAH
DTGTTTAYDBWWN
SELEX
Yin et al.(2017)
FOXI1_eDBD_Methyl-HT-SELEX
0.710
0.884
FOXI1
M04830_2.00
Homo sapiens
AAYRTAAACAAW
WTTGTTTAYRTT
SELEX
Yin et al.(2017)
FOXI1_FL_Methyl-HT-SELEX
0.710
0.884
Foxi1
M09109_2.00
Mus musculus
RRCCAATCAVAD
HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_MOUSE.H11MO.0.B
0.710
0.872
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH80044
Forkhead
97
186
RPPYSYSALIAMSIQNATDKRLTLSQIYQYVAENFPFYKKCKAGWQNSIRHNLSLNDCFKKMPRDENDPGKGNYWTLDSNCEKMFDNGNF
CAA52364
Forkhead
127
216
RPPYSYSALIAMSIQNATDKRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFKKMPRDENDPGKGNYWTLDSNCEKMFDNGNF
Links
Other
Forkhead
family TFs
Other
Xenopus laevis
TFs
156 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SNAPOd2T00016009001
Oikopleura dioica
SNAPOd2T00016009001
I
0.809
foxi4.2.L
Xenopus laevis
XB-GENE-6252155
I
0.781
foxi2.L
Xenopus laevis
XB-GENE-6255082
I
0.762
foxi4.2
Xenopus tropicalis
XB-GENE-487658
I
0.760
SPU_023894
Strongylocentrotus purpuratus
SPU_023894
I
0.729
FOXI1
Anolis carolinensis
ENSACAG00000015950
I
0.725
ENSAMEG00000001516
Ailuropoda melanoleuca
ENSAMEG00000001516
I
0.725
ENSAMXG00000008393
Astyanax mexicanus
ENSAMXG00000008393
I
0.725
FOXI1
Bos taurus
ENSBTAG00000014620
I
0.725
FOXI1
Canis familiaris
ENSCAFG00000016968
I
0.725
FOXI1
Callithrix jacchus
ENSCJAG00000011646
I
0.725
ENSCSAG00000010076
Chlorocebus sabaeus
ENSCSAG00000010076
I
0.725
FOXI1
Dasypus novemcinctus
ENSDNOG00000007480
I
0.725
ENSFALG00000009556
Ficedula albicollis
ENSFALG00000009556
I
0.725
FOXI1
Felis catus
ENSFCAG00000000835
I
0.725
FOXI1
Homo sapiens
ENSG00000168269
D
0.725
FOXI1
Gorilla gorilla
ENSGGOG00000015780
I
0.725
ENSLACG00000017904
Latimeria chalumnae
ENSLACG00000017904
I
0.725
FOXI1
Loxodonta africana
ENSLAFG00000026591
I
0.725
ENSMEUG00000000316
Macropus eugenii
ENSMEUG00000000316
I
0.725
FOXI1
Microcebus murinus
ENSMICG00000012575
I
0.725
FOXI1
Myotis lucifugus
ENSMLUG00000027832
I
0.725
FOXI1
Macaca mulatta
ENSMMUG00000014124
I
0.725
FOXI1
Monodelphis domestica
ENSMODG00000006890
I
0.725
ENSMPUG00000012982
Mustela putorius furo
ENSMPUG00000012982
I
0.725
Foxi1
Mus musculus
ENSMUSG00000047861
D
0.725
ENSNLEG00000005109
Nomascus leucogenys
ENSNLEG00000005109
I
0.725
ENSOARG00000003151
Ovis aries
ENSOARG00000003151
I
0.725
FOXI1
Oryctolagus cuniculus
ENSOCUG00000000836
I
0.725
FOXI1
Otolemur garnettii
ENSOGAG00000032689
I
0.725
ENSONIG00000017618
Oreochromis niloticus
ENSONIG00000017618
I
0.725
ENSPANG00000013256
Papio anubis
ENSPANG00000013256
I
0.725
FOXI1
Procavia capensis
ENSPCAG00000006657
I
0.725
ENSPFOG00000015741
Poecilia formosa
ENSPFOG00000015741
I
0.725
ENSPPYG00000016029
Pongo abelii
ENSPPYG00000016029
I
0.725
FOXI1
Pan troglodytes
ENSPTRG00000017514
I
0.725
FOXI1
Pteropus vampyrus
ENSPVAG00000005974
I
0.725
Foxi1
Rattus norvegicus
ENSRNOG00000006293
I
0.725
ENSSHAG00000018578
Sarcophilus harrisii
ENSSHAG00000018578
I
0.725
FOXI1
Sus scrofa
ENSSSCG00000017009
I
0.725
ENSSTOG00000016524
Ictidomys tridecemlineatus
ENSSTOG00000016524
I
0.725
FOXI1
Tupaia belangeri
ENSTBEG00000000162
I
0.725
FOXI1
Taeniopygia guttata
ENSTGUG00000001568
I
0.725
foxi3a
Tetraodon nigroviridis
ENSTNIG00000017058
I
0.725
foxi3a
Takifugu rubripes
ENSTRUG00000007060
I
0.725
FOXI1
Tursiops truncatus
ENSTTRG00000002178
I
0.725
ENSXMAG00000010462
Xiphophorus maculatus
ENSXMAG00000010462
I
0.725
ENSBTAP00000050534-D2
Bos grunniens
ENSBTAP00000050534-D2
I
0.725
ENSP00000304286
Macaca fascicularis
ENSP00000304286
I
0.725
Gfo_R011197
Geospiza fortis
Gfo_R011197
I
0.725
Myotis_brandtii_FOXI1_10007902
Myotis brandtii
Myotis_brandtii_FOXI1_10007902
I
0.725
Ogr15673
Ophisaurus gracilis
Ogr15673
I
0.725
Pvit_09672
Pogona vitticeps
Pvit_09672
I
0.725
foxi1
Xenopus tropicalis
XB-GENE-494125
I
0.725
foxi1.L
Xenopus laevis
XB-GENE-494129
I
0.725
foxi3a
Gasterosteus aculeatus
ENSGACG00000018474
I
0.724
ENSGMOG00000001944
Gadus morhua
ENSGMOG00000001944
I
0.724
ENSMEUG00000012884
Macropus eugenii
ENSMEUG00000012884
I
0.716
Pvit_14157
Pogona vitticeps
Pvit_14157
I
0.716
foxi1
Gasterosteus aculeatus
ENSGACG00000002658
I
0.714
SNAPOd2T00017674001
Oikopleura dioica
SNAPOd2T00017674001
I
0.710
FOXI1
Cavia porcellus
ENSCPOG00000019611
I
0.703
sep1
Schizosaccharomyces pombe
SPBC4C3.12
I
0.702
ENSTNIG00000001292
Tetraodon nigroviridis
ENSTNIG00000001292
I
0.701
ENSAMXG00000012362
Astyanax mexicanus
ENSAMXG00000012362
I
0.699
ENSPMAG00000009377
Petromyzon marinus
ENSPMAG00000009377
I
0.699
ENSAMXG00000006509
Astyanax mexicanus
ENSAMXG00000006509
I
0.693
foxi1
Danio rerio
ENSDARG00000104566
I
0.693
ENSLOCG00000007685
Lepisosteus oculatus
ENSLOCG00000007685
I
0.693
ENSONIG00000015977
Oreochromis niloticus
ENSONIG00000015977
I
0.693
ENSPFOG00000005531
Poecilia formosa
ENSPFOG00000005531
I
0.693
foxi1
Tetraodon nigroviridis
ENSTNIG00000010372
I
0.693
foxi1
Takifugu rubripes
ENSTRUG00000006701
I
0.693
ENSAPLG00000012296
Anas platyrhynchos
ENSAPLG00000012296
I
0.692
foxi3b
Danio rerio
ENSDARG00000009550
I
0.692
FOXI1
Gallus gallus
ENSGALG00000002105
I
0.692
FOXI1
Meleagris gallopavo
ENSMGAG00000002015
I
0.692
ENSPSIG00000009562
Pelodiscus sinensis
ENSPSIG00000009562
I
0.692
Aan_R013126
Calypte anna
Aan_R013126
I
0.692
Afo_R011902
Aptenodytes forsteri
Afo_R011902
I
0.692
Alligator_sinensis_CCG016013.1
Alligator sinensis
Alligator_sinensis_CCG016013.1
I
0.692
Brh_R008138
Buceros rhinoceros
Brh_R008138
I
0.692
Cmyd_10020111
Chelonia mydas
Cmyd_10020111
I
0.692
Tal_R009461
Tyto alba
Tal_R009461
I
0.692
foxe1.L
Xenopus laevis
XB-GENE-865189
I
0.692
foxd-a/b
Ciona intestinalis
ENSCING00000023594
I
0.687
foxi-a
Ciona intestinalis
ENSCING00000007221
I
0.683
ENSCSAVG00000005989
Ciona savignyi
ENSCSAVG00000005989
I
0.683
ENSLACG00000001429
Latimeria chalumnae
ENSLACG00000001429
I
0.683
ENSLACG00000015173
Latimeria chalumnae
ENSLACG00000015173
I
0.683
ENSLOCG00000009392
Lepisosteus oculatus
ENSLOCG00000009392
I
0.683
ENSPSIG00000009024
Pelodiscus sinensis
ENSPSIG00000009024
I
0.683
fgenesh2_pg.scaffold_167000105
Branchiostoma floridae
fgenesh2_pg.scaffold_167000105
I
0.683
CAD31849
Xenopus laevis
CAD31849
I
0.683
foxi4.1
Xenopus tropicalis
XB-GENE-5996107
I
0.683
foxi4.1.L
Xenopus laevis
XB-GENE-5996119
I
0.683
CapteG154409
Capitella teleta
CapteG154409
I
0.682
FOXI3
Anolis carolinensis
ENSACAG00000008418
I
0.681
ENSFALG00000010199
Ficedula albicollis
ENSFALG00000010199
I
0.681
ENSGALG00000022935
Gallus gallus
ENSGALG00000022935
I
0.681
FOXI3
Taeniopygia guttata
ENSTGUG00000010866
I
0.681
Ogr17043
Ophisaurus gracilis
Ogr17043
I
0.681
CapteG199610
Capitella teleta
CapteG199610
I
0.679
ENSAMXG00000005839
Astyanax mexicanus
ENSAMXG00000005839
I
0.679
foxi3a
Danio rerio
ENSDARG00000055926
I
0.679
foxi2
Danio rerio
ENSDARG00000069715
I
0.679
ENSONIG00000012345
Oreochromis niloticus
ENSONIG00000012345
I
0.679
foxi3
Oryzias latipes
ENSORLG00000017977
I
0.679
ENSPFOG00000002886
Poecilia formosa
ENSPFOG00000002886
I
0.679
foxi2
Takifugu rubripes
ENSTRUG00000003477
I
0.679
FOXI3
Myotis lucifugus
ENSMLUG00000023270
I
0.678
Myotis_brandtii_FOXI3_10004285
Myotis brandtii
Myotis_brandtii_FOXI3_10004285
I
0.678
Sakowv30040829m.g
Saccoglossus kowalevskii
Sakowv30040829m.g
I
0.678
foxi2.S
Xenopus laevis
XB-GENE-982127
I
0.678
ENSMEUG00000016168
Macropus eugenii
ENSMEUG00000016168
I
0.676
foxi2
Tetraodon nigroviridis
ENSTNIG00000003048
I
0.674
TriadG19948
Trichoplax adhaerens
TriadG19948
I
0.674
L596_g2916
Steinernema carpocapsae
L596_g2916
I
0.674
L892_g3155
Steinernema scapterisci
L892_g3155
I
0.674
L893_g1479
Steinernema glaseri
L893_g1479
I
0.674
L898_g7434
Steinernema monticolum
L898_g7434
I
0.674
MESCA005008
Megaselia scalaris
MESCA005008
I
0.673
HHAL002141-PA
Halyomorpha halys
HHAL002141-PA
I
0.672
ENSAMEG00000010082
Ailuropoda melanoleuca
ENSAMEG00000010082
I
0.671
FOXI3
Bos taurus
ENSBTAG00000040093
I
0.671
FOXI3
Canis familiaris
ENSCAFG00000031026
I
0.671
FOXI3
Callithrix jacchus
ENSCJAG00000019348
I
0.671
ENSCSAG00000016393
Chlorocebus sabaeus
ENSCSAG00000016393
I
0.671
FOXI3
Dasypus novemcinctus
ENSDNOG00000024502
I
0.671
FOXI3
Homo sapiens
ENSG00000214336
I
0.671
FOXI3
Gorilla gorilla
ENSGGOG00000001319
I
0.671
FOXI3
Loxodonta africana
ENSLAFG00000020800
I
0.671
FOXI3
Macaca mulatta
ENSMMUG00000014248
I
0.671
ENSMPUG00000009340
Mustela putorius furo
ENSMPUG00000009340
I
0.671
Foxi2
Mus musculus
ENSMUSG00000048377
I
0.671
Foxi3
Mus musculus
ENSMUSG00000055874
I
0.671
ENSNLEG00000003025
Nomascus leucogenys
ENSNLEG00000003025
I
0.671
ENSOARG00000020764
Ovis aries
ENSOARG00000020764
I
0.671
ENSOGAG00000029215
Otolemur garnettii
ENSOGAG00000029215
I
0.671
ENSPANG00000020125
Papio anubis
ENSPANG00000020125
I
0.671
FOXI3
Pteropus vampyrus
ENSPVAG00000001708
I
0.671
Foxi3
Rattus norvegicus
ENSRNOG00000006491
I
0.671
Foxi2
Rattus norvegicus
ENSRNOG00000018917
I
0.671
ENSSTOG00000024731
Ictidomys tridecemlineatus
ENSSTOG00000024731
I
0.671
ENSTSYG00000004092
Tarsius syrichta
ENSTSYG00000004092
I
0.671
Aan_R007110
Calypte anna
Aan_R007110
I
0.671
Cflo_03381--XP_001120632.1_APIME
Camponotus floridanus
Cflo_03381--XP_001120632.1_APIME
I
0.671
ENSBTAP00000050534-D1
Bos grunniens
ENSBTAP00000050534-D1
I
0.671
EURHEDRAFT_407493
Aspergillus ruber
EURHEDRAFT_407493
I
0.670
PCH_Pc20g00650
Penicillium rubens
PCH_Pc20g00650
I
0.670
Pc20g00650
Penicillium chrysogenum
Pc20g00650
I
0.670
FOXI3
Equus caballus
ENSECAG00000026967
I
0.665
FOXI2
Loxodonta africana
ENSLAFG00000002801
I
0.665
foxi2
Xenopus tropicalis
XB-GENE-982122
I
0.665
ENSLOCG00000017724
Lepisosteus oculatus
ENSLOCG00000017724
I
0.664