CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00011p00253850
(
Amborella trichopoda
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
AMTR_s00011p00253850
T191673_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA19
M06893_2.00
Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV
Dap-seq
OMalley et al.(2016)
GATA19_col_a
0.853
0.972
GATA19
M06894_2.00
Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND
Dap-seq
OMalley et al.(2016)
GATA19_colamp_a
0.853
0.972
GATA20
M06884_2.00
Arabidopsis thaliana
GATCBGAT
ATCVGATC
Dap-seq
OMalley et al.(2016)
GATA20_col_a
0.812
0.917
GATA20
M06885_2.00
Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND
Dap-seq
OMalley et al.(2016)
GATA20_colamp_a
0.812
0.917
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERM94740
GATA
92
127
CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERR
Links
Other
GATA
family TFs
Other
Amborella trichopoda
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy