CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GATA17
(
Arabidopsis thaliana
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
AT3G16870
T191712_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.823
0.778
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN
NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.803
0.778
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.803
0.778
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G16870.1
GATA
44
79
CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQA
Links
Other
GATA
family TFs
Other
Arabidopsis thaliana
TFs
112 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29889.m003248
Ricinus communis
29889.m003248
I
0.846
Aquca_003_00608
Aquilegia coerulea
Aquca_003_00608
N
0.822
AT4G16141
Arabidopsis thaliana
AT4G16141
I
0.862
BGIOSGA013867
Oryza indica
BGIOSGA013867
I
0.823
BGIOSGA013869
Oryza indica
BGIOSGA013869
I
0.823
Bo00847s050
Brassica oleracea
Bo00847s050
I
0.834
Bo1g055120
Brassica oleracea
Bo1g055120
I
0.862
Bo1g122970
Brassica oleracea
Bo1g122970
I
0.862
Bo3g068560
Brassica oleracea
Bo3g068560
I
0.862
Bo5g123610
Brassica oleracea
Bo5g123610
I
0.861
Bo7g092660
Brassica oleracea
Bo7g092660
I
0.803
Bo7g104200
Brassica oleracea
Bo7g104200
I
0.862
Bostr.15774s0060
Boechera stricta
Bostr.15774s0060
I
0.834
Bostr.22252s0362
Boechera stricta
Bostr.22252s0362
I
0.803
Bostr.28625s0006
Boechera stricta
Bostr.28625s0006
I
0.867
Bostr.30275s0055
Boechera stricta
Bostr.30275s0055
I
0.862
Bra012742
Brassica rapa
Bra012742
I
0.862
Bra020650
Brassica rapa
Bra020650
I
0.808
Bra021209
Brassica rapa
Bra021209
I
0.862
Bra022184
Brassica rapa
Bra022184
I
0.862
Bra033533
Brassica rapa
Bra033533
I
0.862
Bra037421
Brassica rapa
Bra037421
I
0.803
BRADI1G03020
Brachypodium distachyon
BRADI1G03020
I
0.823
Cagra.0053s0014
Capsella grandiflora
Cagra.0053s0014
I
0.862
Cagra.0133s0025
Capsella grandiflora
Cagra.0133s0025
I
0.803
Cagra.5497s0020
Capsella grandiflora
Cagra.5497s0020
I
0.867
Carubv10005860m.g
Capsella rubella
Carubv10005860m.g
I
0.862
Carubv10014665m.g
Capsella rubella
Carubv10014665m.g
I
0.867
Carubv10014841m.g
Capsella rubella
Carubv10014841m.g
I
0.803
Carubv10027332m.g
Capsella rubella
Carubv10027332m.g
I
0.834
cassava15577.m1
Manihot esculenta
cassava15577.m1
I
0.834
cassava15588.m1
Manihot esculenta
cassava15588.m1
I
0.834
cassava37139.valid.m1
Manihot esculenta
cassava37139.valid.m1
I
0.846
cassava43030.valid.m1
Manihot esculenta
cassava43030.valid.m1
I
0.848
Ca_02992
Cicer arietinum
Ca_02992
I
0.846
Ciclev10003698m.g
Citrus clementina
Ciclev10003698m.g
I
0.833
Ciclev10006161m.g
Citrus clementina
Ciclev10006161m.g
I
0.848
Ciclev10022856m.g
Citrus clementina
Ciclev10022856m.g
I
0.806
Cla009422
Citrullus lanatus
Cla009422
I
0.848
Cla022104
Citrullus lanatus
Cla022104
I
0.848
Cucsa.069460
Cucumis sativus
Cucsa.069460
I
0.848
Cucsa.252730
Cucumis sativus
Cucsa.252730
I
0.848
Eucgr.A00193
Eucalyptus grandis
Eucgr.A00193
I
0.848
Eucgr.H04023
Eucalyptus grandis
Eucgr.H04023
I
0.848
evm.TU.supercontig_151.51
Carica papaya
evm.TU.supercontig_151.51
I
0.834
evm.TU.supercontig_48.133
Carica papaya
evm.TU.supercontig_48.133
I
0.834
evm.TU.supercontig_9.102
Carica papaya
evm.TU.supercontig_9.102
I
0.848
fgenesh1_pm.C_scaffold_7002128
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7002128
I
0.862
GATA15
Arabidopsis thaliana
AT3G06740
D
0.803
GATA15
Arabidopsis lyrata
fgenesh2_kg.3__690__AT3G06740.1
I
0.803
GATA16
Arabidopsis thaliana
AT5G49300
D
0.823
GATA16
Arabidopsis lyrata
scaffold_801309.1
I
0.834
GATA17
Arabidopsis lyrata
fgenesh2_kg.3__1856__AT3G16870.1
I
0.867
gene05175-v1.0-hybrid
Fragaria vesca
gene05175-v1.0-hybrid
I
0.848
GLYMA07G37190
Glycine max
GLYMA07G37190
I
0.846
GLYMA17G03410
Glycine max
GLYMA17G03410
I
0.846
Gorai.002G029400
Gossypium raimondii
Gorai.002G029400
I
0.831
Gorai.005G065300
Gossypium raimondii
Gorai.005G065300
I
0.848
Gorai.007G125000
Gossypium raimondii
Gorai.007G125000
I
0.833
Gorai.008G142200
Gossypium raimondii
Gorai.008G142200
I
0.833
Gorai.013G127900
Gossypium raimondii
Gorai.013G127900
I
0.834
Gorai.013G206400
Gossypium raimondii
Gorai.013G206400
N
0.811
LjSGA_011217.1
Lotus japonicus
LjSGA_011217.1
I
0.846
LPERR03G33900
Leersia perrieri
LPERR03G33900
I
0.823
Lus10016849.g
Linum usitatissimum
Lus10016849.g
I
0.848
Lus10031464.g
Linum usitatissimum
Lus10031464.g
I
0.814
Lus10037721.g
Linum usitatissimum
Lus10037721.g
I
0.848
MDP0000309902
Malus domestica
MDP0000309902
I
0.814
mgf003937m
Mimulus guttatus
mgf003937m
I
0.848
mgf022078m
Mimulus guttatus
mgf022078m
I
0.838
MTR_4g121110
Medicago truncatula
MTR_4g121110
I
0.846
OBART03G39750
Oryza barthii
OBART03G39750
I
0.823
OGLUM03G39650
Oryza glumaepatula
OGLUM03G39650
I
0.823
OLONG_023900
Oryza longistaminata
OLONG_023900
I
0.823
OMERI03G36600
Oryza meridionalis
OMERI03G36600
I
0.823
ONIVA03G41600
Oryza nivara
ONIVA03G41600
I
0.823
OPUNC03G36900
Oryza punctata
OPUNC03G36900
I
0.823
OPUNC03G36910
Oryza punctata
OPUNC03G36910
I
0.823
orange1.1g030971m.g
Citrus sinensis
orange1.1g030971m.g
I
0.833
orange1.1g032112m.g
Citrus sinensis
orange1.1g032112m.g
I
0.848
orange1.1g033001m.g
Citrus sinensis
orange1.1g033001m.g
I
0.806
ORUFI03G41540
Oryza rufipogon
ORUFI03G41540
I
0.823
OS03G0831200
Oryza sativa
OS03G0831200
I
0.823
PGSC0003DMG400002337
Solanum tuberosum
PGSC0003DMG400002337
I
0.832
PGSC0003DMG400004624
Solanum tuberosum
PGSC0003DMG400004624
I
0.848
PGSC0003DMG400023434
Solanum tuberosum
PGSC0003DMG400023434
I
0.862
PGSC0003DMG400024783
Solanum tuberosum
PGSC0003DMG400024783
I
0.822
PK18820.1
Cannabis sativa
PK18820.1
I
0.848
PK21934.1
Cannabis sativa
PK21934.1
I
0.819
Pm003128
Prunus mume
Pm003128
I
0.806
Pm008287
Prunus mume
Pm008287
I
0.848
POPTR_0005s02040
Populus trichocarpa
POPTR_0005s02040
I
0.834
POPTR_0008s22950
Populus trichocarpa
POPTR_0008s22950
I
0.846
POPTR_0010s00360
Populus trichocarpa
POPTR_0010s00360
I
0.846
PRUPE_ppa013171mg
Prunus persica
PRUPE_ppa013171mg
I
0.848
PRUPE_ppa015310mg
Prunus persica
PRUPE_ppa015310mg
I
0.806
SapurV1A.0107s0060
Salix purpurea
SapurV1A.0107s0060
I
0.834
SapurV1A.0186s0560
Salix purpurea
SapurV1A.0186s0560
I
0.834
SapurV1A.0739s0060
Salix purpurea
SapurV1A.0739s0060
I
0.846
SapurV1A.2413s0010
Salix purpurea
SapurV1A.2413s0010
I
0.846
Solyc01g100220.2
Solanum lycopersicum
Solyc01g100220.2
I
0.822
Solyc05g054400.2
Solanum lycopersicum
Solyc05g054400.2
I
0.862
Solyc12g099370.1
Solanum lycopersicum
Solyc12g099370.1
I
0.848
TCM_004753
Theobroma cacao
TCM_004753
I
0.833
TCM_021303
Theobroma cacao
TCM_021303
I
0.848
TCM_026732
Theobroma cacao
TCM_026732
I
0.834
Thhalv10005103m.g
Eutrema salsugineum
Thhalv10005103m.g
I
0.834
Thhalv10021612m.g
Eutrema salsugineum
Thhalv10021612m.g
I
0.867
Thhalv10021708m.g
Eutrema salsugineum
Thhalv10021708m.g
I
0.803
Thhalv10026300m.g
Eutrema salsugineum
Thhalv10026300m.g
I
0.862
VIT_05s0077g01450
Vitis vinifera
VIT_05s0077g01450
I
0.848
VIT_14s0060g01520
Vitis vinifera
VIT_14s0060g01520
I
0.808