CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pm.C_scaffold_7002128
(
Arabidopsis lyrata
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
fgenesh1_pm.C_scaffold_7002128
T193285_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.828
0.806
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN
NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.808
0.806
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.808
0.806
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_7002128
GATA
39
74
CVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQA
Links
Other
GATA
family TFs
Other
Arabidopsis lyrata
TFs
112 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29889.m003248
Ricinus communis
29889.m003248
I
0.846
Aquca_003_00608
Aquilegia coerulea
Aquca_003_00608
N
0.822
GATA15
Arabidopsis thaliana
AT3G06740
D
0.808
GATA17
Arabidopsis thaliana
AT3G16870
I
0.862
AT4G16141
Arabidopsis thaliana
AT4G16141
I
0.867
GATA16
Arabidopsis thaliana
AT5G49300
D
0.828
BGIOSGA013867
Oryza indica
BGIOSGA013867
I
0.823
BGIOSGA013869
Oryza indica
BGIOSGA013869
I
0.823
Bo00847s050
Brassica oleracea
Bo00847s050
I
0.839
Bo1g055120
Brassica oleracea
Bo1g055120
I
0.862
Bo1g122970
Brassica oleracea
Bo1g122970
I
0.862
Bo3g068560
Brassica oleracea
Bo3g068560
I
0.862
Bo5g123610
Brassica oleracea
Bo5g123610
I
0.861
Bo7g092660
Brassica oleracea
Bo7g092660
I
0.808
Bo7g104200
Brassica oleracea
Bo7g104200
I
0.862
Bostr.15774s0060
Boechera stricta
Bostr.15774s0060
I
0.839
Bostr.22252s0362
Boechera stricta
Bostr.22252s0362
I
0.808
Bostr.28625s0006
Boechera stricta
Bostr.28625s0006
I
0.862
Bostr.30275s0055
Boechera stricta
Bostr.30275s0055
I
0.867
Bra012742
Brassica rapa
Bra012742
I
0.867
Bra020650
Brassica rapa
Bra020650
I
0.812
Bra021209
Brassica rapa
Bra021209
I
0.862
Bra022184
Brassica rapa
Bra022184
I
0.862
Bra033533
Brassica rapa
Bra033533
I
0.862
Bra037421
Brassica rapa
Bra037421
I
0.808
BRADI1G03020
Brachypodium distachyon
BRADI1G03020
I
0.823
Cagra.0053s0014
Capsella grandiflora
Cagra.0053s0014
I
0.867
Cagra.0133s0025
Capsella grandiflora
Cagra.0133s0025
I
0.808
Cagra.5497s0020
Capsella grandiflora
Cagra.5497s0020
I
0.862
Carubv10005860m.g
Capsella rubella
Carubv10005860m.g
I
0.867
Carubv10014665m.g
Capsella rubella
Carubv10014665m.g
I
0.862
Carubv10014841m.g
Capsella rubella
Carubv10014841m.g
I
0.808
Carubv10027332m.g
Capsella rubella
Carubv10027332m.g
I
0.839
cassava15577.m1
Manihot esculenta
cassava15577.m1
I
0.834
cassava15588.m1
Manihot esculenta
cassava15588.m1
I
0.834
cassava37139.valid.m1
Manihot esculenta
cassava37139.valid.m1
I
0.846
cassava43030.valid.m1
Manihot esculenta
cassava43030.valid.m1
I
0.852
Ca_02992
Cicer arietinum
Ca_02992
I
0.851
Ciclev10003698m.g
Citrus clementina
Ciclev10003698m.g
I
0.833
Ciclev10006161m.g
Citrus clementina
Ciclev10006161m.g
I
0.848
Ciclev10022856m.g
Citrus clementina
Ciclev10022856m.g
I
0.806
Cla009422
Citrullus lanatus
Cla009422
I
0.848
Cla022104
Citrullus lanatus
Cla022104
I
0.852
Cucsa.069460
Cucumis sativus
Cucsa.069460
I
0.848
Cucsa.252730
Cucumis sativus
Cucsa.252730
I
0.852
Eucgr.A00193
Eucalyptus grandis
Eucgr.A00193
I
0.852
Eucgr.H04023
Eucalyptus grandis
Eucgr.H04023
I
0.848
evm.TU.supercontig_151.51
Carica papaya
evm.TU.supercontig_151.51
I
0.834
evm.TU.supercontig_48.133
Carica papaya
evm.TU.supercontig_48.133
I
0.834
evm.TU.supercontig_9.102
Carica papaya
evm.TU.supercontig_9.102
I
0.852
GATA17
Arabidopsis lyrata
fgenesh2_kg.3__1856__AT3G16870.1
I
0.862
GATA15
Arabidopsis lyrata
fgenesh2_kg.3__690__AT3G06740.1
I
0.808
gene05175-v1.0-hybrid
Fragaria vesca
gene05175-v1.0-hybrid
I
0.852
GLYMA07G37190
Glycine max
GLYMA07G37190
I
0.846
GLYMA17G03410
Glycine max
GLYMA17G03410
I
0.846
Gorai.002G029400
Gossypium raimondii
Gorai.002G029400
I
0.836
Gorai.005G065300
Gossypium raimondii
Gorai.005G065300
I
0.852
Gorai.007G125000
Gossypium raimondii
Gorai.007G125000
I
0.833
Gorai.008G142200
Gossypium raimondii
Gorai.008G142200
I
0.833
Gorai.013G127900
Gossypium raimondii
Gorai.013G127900
I
0.834
Gorai.013G206400
Gossypium raimondii
Gorai.013G206400
N
0.811
LjSGA_011217.1
Lotus japonicus
LjSGA_011217.1
I
0.851
LPERR03G33900
Leersia perrieri
LPERR03G33900
I
0.823
Lus10016849.g
Linum usitatissimum
Lus10016849.g
I
0.852
Lus10031464.g
Linum usitatissimum
Lus10031464.g
I
0.814
Lus10037721.g
Linum usitatissimum
Lus10037721.g
I
0.852
MDP0000309902
Malus domestica
MDP0000309902
I
0.814
mgf003937m
Mimulus guttatus
mgf003937m
I
0.852
mgf022078m
Mimulus guttatus
mgf022078m
I
0.838
MTR_4g121110
Medicago truncatula
MTR_4g121110
I
0.851
OBART03G39750
Oryza barthii
OBART03G39750
I
0.823
OGLUM03G39650
Oryza glumaepatula
OGLUM03G39650
I
0.823
OLONG_023900
Oryza longistaminata
OLONG_023900
I
0.823
OMERI03G36600
Oryza meridionalis
OMERI03G36600
I
0.823
ONIVA03G41600
Oryza nivara
ONIVA03G41600
I
0.823
OPUNC03G36900
Oryza punctata
OPUNC03G36900
I
0.823
OPUNC03G36910
Oryza punctata
OPUNC03G36910
I
0.823
orange1.1g030971m.g
Citrus sinensis
orange1.1g030971m.g
I
0.833
orange1.1g032112m.g
Citrus sinensis
orange1.1g032112m.g
I
0.848
orange1.1g033001m.g
Citrus sinensis
orange1.1g033001m.g
I
0.806
ORUFI03G41540
Oryza rufipogon
ORUFI03G41540
I
0.823
OS03G0831200
Oryza sativa
OS03G0831200
I
0.823
PGSC0003DMG400002337
Solanum tuberosum
PGSC0003DMG400002337
I
0.828
PGSC0003DMG400004624
Solanum tuberosum
PGSC0003DMG400004624
I
0.848
PGSC0003DMG400023434
Solanum tuberosum
PGSC0003DMG400023434
I
0.862
PGSC0003DMG400024783
Solanum tuberosum
PGSC0003DMG400024783
I
0.822
PK18820.1
Cannabis sativa
PK18820.1
I
0.848
PK21934.1
Cannabis sativa
PK21934.1
I
0.819
Pm003128
Prunus mume
Pm003128
I
0.806
Pm008287
Prunus mume
Pm008287
I
0.852
POPTR_0005s02040
Populus trichocarpa
POPTR_0005s02040
I
0.834
POPTR_0008s22950
Populus trichocarpa
POPTR_0008s22950
I
0.851
POPTR_0010s00360
Populus trichocarpa
POPTR_0010s00360
I
0.851
PRUPE_ppa013171mg
Prunus persica
PRUPE_ppa013171mg
I
0.852
PRUPE_ppa015310mg
Prunus persica
PRUPE_ppa015310mg
I
0.806
SapurV1A.0107s0060
Salix purpurea
SapurV1A.0107s0060
I
0.834
SapurV1A.0186s0560
Salix purpurea
SapurV1A.0186s0560
I
0.834
SapurV1A.0739s0060
Salix purpurea
SapurV1A.0739s0060
I
0.851
SapurV1A.2413s0010
Salix purpurea
SapurV1A.2413s0010
I
0.851
GATA16
Arabidopsis lyrata
scaffold_801309.1
I
0.839
Solyc01g100220.2
Solanum lycopersicum
Solyc01g100220.2
I
0.822
Solyc05g054400.2
Solanum lycopersicum
Solyc05g054400.2
I
0.862
Solyc12g099370.1
Solanum lycopersicum
Solyc12g099370.1
I
0.848
TCM_004753
Theobroma cacao
TCM_004753
I
0.833
TCM_021303
Theobroma cacao
TCM_021303
I
0.852
TCM_026732
Theobroma cacao
TCM_026732
I
0.834
Thhalv10005103m.g
Eutrema salsugineum
Thhalv10005103m.g
I
0.839
Thhalv10021612m.g
Eutrema salsugineum
Thhalv10021612m.g
I
0.862
Thhalv10021708m.g
Eutrema salsugineum
Thhalv10021708m.g
I
0.808
Thhalv10026300m.g
Eutrema salsugineum
Thhalv10026300m.g
I
0.862
VIT_05s0077g01450
Vitis vinifera
VIT_05s0077g01450
I
0.848
VIT_14s0060g01520
Vitis vinifera
VIT_14s0060g01520
I
0.808