CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA10G25480
(
Glycine max
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
GLYMA10G25480
T193488_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA10
M01994_2.00
Arabidopsis thaliana
CAGATCTA
TAGATCTG
PBM
Weirauch et al.(2014)
pTH7615
0.843
0.833
GATA11
M01995_2.00
Arabidopsis thaliana
CAGATCTH
DAGATCTG
PBM
Weirauch et al.(2014)
pTH7486
0.843
0.833
GATA11
M06882_2.00
Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD
Dap-seq
OMalley et al.(2016)
GATA11_col_a
0.843
0.833
GATA1
M01998_2.00
Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN
PBM
Weirauch et al.(2014)
pTH8144
0.842
0.944
GATA1
M06887_2.00
Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY
Dap-seq
OMalley et al.(2016)
GATA1_col_a
0.842
0.944
GATA1
M06888_2.00
Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND
Dap-seq
OMalley et al.(2016)
GATA1_colamp_a
0.842
0.944
Q76DY3_TOBAC
M10600_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGP1_01
0.833
0.833
GATA6
M01999_2.00
Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN
PBM
Weirauch et al.(2014)
pTH7317
0.833
0.806
GATA6
M06890_2.00
Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR
Dap-seq
OMalley et al.(2016)
GATA6_col200_a
0.833
0.806
GATA3
M02003_2.00
Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN
PBM
Weirauch et al.(2014)
pTH7657
0.832
0.806
GATA7
M02004_2.00
Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN
PBM
Weirauch et al.(2014)
pTH7658
0.832
0.806
GATA4
M00727_2.00
Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN
PBM
Chang et al.(2013)
pTH7196
0.823
0.833
GATA9
M02002_2.00
Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN
PBM
Weirauch et al.(2014)
pTH7378
0.823
0.833
GATA4
M06891_2.00
Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND
Dap-seq
OMalley et al.(2016)
GATA4_col_a
0.823
0.833
GATA12
M00863_2.00
Arabidopsis thaliana
NNNGATBN
NVATCNNN
PBM
Franco-Zorrilla et al.(2014)
GATA12
0.819
0.806
GATA12
M06895_2.00
Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH
Dap-seq
OMalley et al.(2016)
GATA12_col_a
0.819
0.806
GATA12
M06896_2.00
Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR
Dap-seq
OMalley et al.(2016)
GATA12_colamp_a
0.819
0.806
GATA8
M02000_2.00
Arabidopsis thaliana
NNGATYYVN
NBRRATCNN
PBM
Weirauch et al.(2014)
pTH7665
0.819
0.778
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA10G25480.1
GATA
175
210
CQHCGAEKTPQWRAGPSGPKTLCNACGVRFKSGRLV
Links
Other
GATA
family TFs
Other
Glycine max
TFs
605 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
DREB1F
Arabidopsis thaliana
AT1G12610
D
DREB1C
Arabidopsis thaliana
AT4G25470
D
DREB1A
Arabidopsis thaliana
AT4G25480
D
DREB1D
Arabidopsis thaliana
AT5G51990
D
DDF1
Arabidopsis lyrata
fgenesh2_kg.1__1363__AT1G12610.1
D
DREB1G
Oryza sativa
OS02G0677300
D
DREB1E
Oryza sativa
OS04G0572400
D
DREB1G
Oryza indica
BGIOSGA008804
I
DREB1E
Oryza indica
BGIOSGA016950
I
Bo01335s010
Brassica oleracea
Bo01335s010
I
Bo8g108050
Brassica oleracea
Bo8g108050
I
Bo9g104770
Brassica oleracea
Bo9g104770
I
Bra016763
Brassica rapa
Bra016763
I
Bra026963
Brassica rapa
Bra026963
I
Bra028290
Brassica rapa
Bra028290
I
BRADI3G51630
Brachypodium distachyon
BRADI3G51630
I
CBF2
Arabidopsis lyrata
fgenesh2_kg.7__1712__AT4G25470.1
I
GLYMA09G27180
Glycine max
GLYMA09G27180
I
GLYMA10G38440
Glycine max
GLYMA10G38440
I
GLYMA12G09130
Glycine max
GLYMA12G09130
I
GLYMA12G30740
Glycine max
GLYMA12G30740
I
GLYMA13G39540
Glycine max
GLYMA13G39540
I
GRMZM2G137341
Zea mays
GRMZM2G137341
I
GSMUA_Achr11G21630_001
Musa acuminata
GSMUA_Achr11G21630_001
I
GSMUA_Achr8G11980_001
Musa acuminata
GSMUA_Achr8G11980_001
I
LPERR02G22610
Leersia perrieri
LPERR02G22610
I
LPERR04G18190
Leersia perrieri
LPERR04G18190
I
MLOC_75886
Hordeum vulgare
MLOC_75886
I
MTR_1g101600
Medicago truncatula
MTR_1g101600
I
MTR_2g085015
Medicago truncatula
MTR_2g085015
I
MTR_6g465430
Medicago truncatula
MTR_6g465430
I
MTR_6g465450
Medicago truncatula
MTR_6g465450
I
MTR_6g465460
Medicago truncatula
MTR_6g465460
I
MTR_6g465510
Medicago truncatula
MTR_6g465510
I
MTR_6g465530
Medicago truncatula
MTR_6g465530
I
MTR_6g465690
Medicago truncatula
MTR_6g465690
I
MTR_6g465850
Medicago truncatula
MTR_6g465850
I
MTR_6g466000
Medicago truncatula
MTR_6g466000
I
MTR_6g466130
Medicago truncatula
MTR_6g466130
I
MTR_8g006410
Medicago truncatula
MTR_8g006410
I
OBART02G27760
Oryza barthii
OBART02G27760
I
OBART04G22220
Oryza barthii
OBART04G22220
I
OGLUM02G28340
Oryza glumaepatula
OGLUM02G28340
I
OGLUM04G22260
Oryza glumaepatula
OGLUM04G22260
I
OMERI02G26980
Oryza meridionalis
OMERI02G26980
I
OMERI04G18770
Oryza meridionalis
OMERI04G18770
I
ONIVA02G30790
Oryza nivara
ONIVA02G30790
I
ONIVA04G20840
Oryza nivara
ONIVA04G20840
I
OPUNC02G25480
Oryza punctata
OPUNC02G25480
I
OPUNC04G19970
Oryza punctata
OPUNC04G19970
I
ORGLA04G0192900
Oryza glaberrima
ORGLA04G0192900
I
ORUFI02G29230
Oryza rufipogon
ORUFI02G29230
I
ORUFI04G23890
Oryza rufipogon
ORUFI04G23890
I
PGSC0003DMG400004255
Solanum tuberosum
PGSC0003DMG400004255
I
PGSC0003DMG400012525
Solanum tuberosum
PGSC0003DMG400012525
I
PGSC0003DMG400014309
Solanum tuberosum
PGSC0003DMG400014309
I
PGSC0003DMG400014310
Solanum tuberosum
PGSC0003DMG400014310
I
PGSC0003DMG400014311
Solanum tuberosum
PGSC0003DMG400014311
I
POPTR_0001s08710
Populus trichocarpa
POPTR_0001s08710
I
POPTR_0001s08720
Populus trichocarpa
POPTR_0001s08720
I
POPTR_0004s19820
Populus trichocarpa
POPTR_0004s19820
I
POPTR_0009s14990
Populus trichocarpa
POPTR_0009s14990
I
POPTR_0012s13870
Populus trichocarpa
POPTR_0012s13870
I
POPTR_0015s13830
Populus trichocarpa
POPTR_0015s13830
I
PRUPE_ppa010800mg
Prunus persica
PRUPE_ppa010800mg
I
PRUPE_ppa010909mg
Prunus persica
PRUPE_ppa010909mg
I
PRUPE_ppa010935mg
Prunus persica
PRUPE_ppa010935mg
I
PRUPE_ppa021197mg
Prunus persica
PRUPE_ppa021197mg
I
Sb04g031950
Sorghum bicolor
Sb04g031950
I
CBF4
Arabidopsis lyrata
scaffold_801637.1
I
Si018262m.g
Setaria italica
Si018262m.g
I
Solyc03g026270.1
Solanum lycopersicum
Solyc03g026270.1
I
Solyc03g026280.2
Solanum lycopersicum
Solyc03g026280.2
I
Solyc03g124110.1
Solanum lycopersicum
Solyc03g124110.1
I
Solyc08g007820.1
Solanum lycopersicum
Solyc08g007820.1
I
TCM_016175
Theobroma cacao
TCM_016175
I
VIT_02s0025g04460
Vitis vinifera
VIT_02s0025g04460
I
VIT_06s0061g01400
Vitis vinifera
VIT_06s0061g01400
I
VIT_16s0100g00380
Vitis vinifera
VIT_16s0100g00380
I
Ca_08732
Cicer arietinum
Ca_08732
I
Ca_18948
Cicer arietinum
Ca_18948
I
Cla002362
Citrullus lanatus
Cla002362
I
Cla006315
Citrullus lanatus
Cla006315
I
Cla011674
Citrullus lanatus
Cla011674
I
Pm023769
Prunus mume
Pm023769
I
Pm023772
Prunus mume
Pm023772
I
Pm023775
Prunus mume
Pm023775
I
30147.m014313
Ricinus communis
30147.m014313
I
30190.m011119
Ricinus communis
30190.m011119
I
30190.m011120
Ricinus communis
30190.m011120
I
60638.m00016
Ricinus communis
60638.m00016
I
cassava17064.m1
Manihot esculenta
cassava17064.m1
I
cassava18935.valid.m1
Manihot esculenta
cassava18935.valid.m1
I
cassava35062.m1
Manihot esculenta
cassava35062.m1
I
cassava41192.m1
Manihot esculenta
cassava41192.m1
I
cassava41218.m1
Manihot esculenta
cassava41218.m1
I
Cucsa.166340
Cucumis sativus
Cucsa.166340
I
Cucsa.251030
Cucumis sativus
Cucsa.251030
I
Cucsa.302750
Cucumis sativus
Cucsa.302750
I
mgf017136m
Mimulus guttatus
mgf017136m
I
mgf019061m
Mimulus guttatus
mgf019061m
I
mgf026339m
Mimulus guttatus
mgf026339m
I
mgf026642m
Mimulus guttatus
mgf026642m
I
Aquca_012_00144
Aquilegia coerulea
Aquca_012_00144
I
Aquca_013_00435
Aquilegia coerulea
Aquca_013_00435
I
Aquca_013_00436
Aquilegia coerulea
Aquca_013_00436
I
Bostr.15774s0346
Boechera stricta
Bostr.15774s0346
I
Bostr.7867s0359
Boechera stricta
Bostr.7867s0359
I
Bostr.7867s0360
Boechera stricta
Bostr.7867s0360
I
Bostr.7867s0361
Boechera stricta
Bostr.7867s0361
I
Cagra.0094s0011
Capsella grandiflora
Cagra.0094s0011
I
Cagra.2248s0026
Capsella grandiflora
Cagra.2248s0026
I
Cagra.28753s0001
Capsella grandiflora
Cagra.28753s0001
I
Carubv10005709m.g
Capsella rubella
Carubv10005709m.g
I
Carubv10006965m.g
Capsella rubella
Carubv10006965m.g
I
Carubv10027759m.g
Capsella rubella
Carubv10027759m.g
I
Ciclev10021923m.g
Citrus clementina
Ciclev10021923m.g
I
Eucgr.A02818
Eucalyptus grandis
Eucgr.A02818
I
Eucgr.D01925
Eucalyptus grandis
Eucgr.D01925
I
Eucgr.E00529
Eucalyptus grandis
Eucgr.E00529
I
evm.TU.supercontig_74.84
Carica papaya
evm.TU.supercontig_74.84
I
gene13329-v1.0-hybrid
Fragaria vesca
gene13329-v1.0-hybrid
I
gene32378-v1.0-hybrid
Fragaria vesca
gene32378-v1.0-hybrid
I
Gorai.006G046200
Gossypium raimondii
Gorai.006G046200
I
Gorai.007G010100
Gossypium raimondii
Gorai.007G010100
I
Gorai.008G243600
Gossypium raimondii
Gorai.008G243600
I
Lus10001871.g
Linum usitatissimum
Lus10001871.g
I
Lus10006332.g
Linum usitatissimum
Lus10006332.g
I
Lus10006334.g
Linum usitatissimum
Lus10006334.g
I
Lus10029601.g
Linum usitatissimum
Lus10029601.g
I
Lus10029602.g
Linum usitatissimum
Lus10029602.g
I
MDP0000154764
Malus domestica
MDP0000154764
I
MDP0000198054
Malus domestica
MDP0000198054
I
orange1.1g029015m.g
Citrus sinensis
orange1.1g029015m.g
I
Pavir.Aa00912
Panicum virgatum
Pavir.Aa00912
I
Pavir.Ab02685
Panicum virgatum
Pavir.Ab02685
I
SapurV1A.0045s0710
Salix purpurea
SapurV1A.0045s0710
I
SapurV1A.0068s0560
Salix purpurea
SapurV1A.0068s0560
I
SapurV1A.0219s0320
Salix purpurea
SapurV1A.0219s0320
I
SapurV1A.0282s0070
Salix purpurea
SapurV1A.0282s0070
I
SapurV1A.0282s0080
Salix purpurea
SapurV1A.0282s0080
I
SapurV1A.0400s0160
Salix purpurea
SapurV1A.0400s0160
I
Thhalv10009978m.g
Eutrema salsugineum
Thhalv10009978m.g
I
Thhalv10015252m.g
Eutrema salsugineum
Thhalv10015252m.g
I
Thhalv10027405m.g
Eutrema salsugineum
Thhalv10027405m.g
I
PK23332.1
Cannabis sativa
PK23332.1
I
chr3.LjT42M03.60.nd
Lotus japonicus
chr3.LjT42M03.60.nd
I
LjSGA_037211.1
Lotus japonicus
LjSGA_037211.1
I