CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G058479
(
Zea mays
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
GRMZM2G058479
T193552_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN
NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.862
0.944
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN
NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.862
0.889
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN
NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.847
0.806
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.847
0.806
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.806
0.778
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G058479_P01
GATA
268
305
CHHCGTNATATPMMRRGPDGPRTLCNACGLMWANKGLL
GRMZM2G058479_P02
GATA
164
201
CHHCGTNATATPMMRRGPDGPRTLCNACGLMWANKGLL
Links
Other
GATA
family TFs
Other
Zea mays
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_08559
Aegilops tauschii
F775_08559
I
0.843
Aquca_007_00522
Aquilegia coerulea
Aquca_007_00522
I
0.847
Aquca_010_00250
Aquilegia coerulea
Aquca_010_00250
I
0.837
Aquca_018_00034
Aquilegia coerulea
Aquca_018_00034
I
0.843
ZML1
Arabidopsis lyrata
fgenesh2_kg.3__2338__AT3G21175.1
I
0.857
TIFY1
Arabidopsis lyrata
fgenesh2_kg.7__1832__AT4G24470.2
I
0.806
ZML2
Arabidopsis lyrata
scaffold_104929.1
I
0.847
GATA24
Arabidopsis thaliana
AT3G21175
D
0.862
GATA28
Arabidopsis thaliana
AT1G51600
D
0.847
ZIM
Arabidopsis thaliana
AT4G24470
D
0.806
Bostr.26675s0048
Boechera stricta
Bostr.26675s0048
I
0.847
Bostr.7867s0254
Boechera stricta
Bostr.7867s0254
I
0.806
BRADI1G33980
Brachypodium distachyon
BRADI1G33980
I
0.862
BRADI3G03800
Brachypodium distachyon
BRADI3G03800
I
0.829
Bo1g039000
Brassica oleracea
Bo1g039000
I
0.806
Bo1g108240
Brassica oleracea
Bo1g108240
I
0.851
Bo3g181450
Brassica oleracea
Bo3g181450
I
0.847
Bo5g103560
Brassica oleracea
Bo5g103560
I
0.851
Bra013805
Brassica rapa
Bra013805
I
0.806
Bra014292
Brassica rapa
Bra014292
I
0.845
Bra023900
Brassica rapa
Bra023900
I
0.851
Bra031258
Brassica rapa
Bra031258
I
0.851
PK11000.1
Cannabis sativa
PK11000.1
I
0.806
Cagra.1757s0004
Capsella grandiflora
Cagra.1757s0004
I
0.851
Cagra.2171s0014
Capsella grandiflora
Cagra.2171s0014
I
0.806
Cagra.2346s0015
Capsella grandiflora
Cagra.2346s0015
I
0.847
Carubv10006355m.g
Capsella rubella
Carubv10006355m.g
I
0.806
Carubv10009866m.g
Capsella rubella
Carubv10009866m.g
I
0.847
Carubv10016131m.g
Capsella rubella
Carubv10016131m.g
I
0.851
evm.TU.supercontig_155.28
Carica papaya
evm.TU.supercontig_155.28
I
0.845
Ca_01471
Cicer arietinum
Ca_01471
I
0.810
Ca_17522
Cicer arietinum
Ca_17522
I
0.847
Cla013127
Citrullus lanatus
Cla013127
I
0.836
Cla015736
Citrullus lanatus
Cla015736
I
0.856
Ciclev10027306m.g
Citrus clementina
Ciclev10027306m.g
I
0.847
orange1.1g022728m.g
Citrus sinensis
orange1.1g022728m.g
I
0.847
Cucsa.218190
Cucumis sativus
Cucsa.218190
I
0.837
Cucsa.359570
Cucumis sativus
Cucsa.359570
I
0.857
Eucgr.J03166
Eucalyptus grandis
Eucgr.J03166
I
0.847
Thhalv10011695m.g
Eutrema salsugineum
Thhalv10011695m.g
I
0.847
Thhalv10020970m.g
Eutrema salsugineum
Thhalv10020970m.g
I
0.847
Thhalv10025795m.g
Eutrema salsugineum
Thhalv10025795m.g
I
0.806
GLYMA08G23720
Glycine max
GLYMA08G23720
I
0.847
Gorai.008G017800
Gossypium raimondii
Gorai.008G017800
I
0.832
MLOC_17061
Hordeum vulgare
MLOC_17061
I
0.856
MLOC_3107
Hordeum vulgare
MLOC_3107
I
0.843
LPERR02G03330
Leersia perrieri
LPERR02G03330
I
0.857
LPERR06G21800
Leersia perrieri
LPERR06G21800
I
0.857
LPERR11G14110
Leersia perrieri
LPERR11G14110
I
0.842
LjSGA_067759.1
Lotus japonicus
LjSGA_067759.1
I
0.823
cassava12169.valid.m1
Manihot esculenta
cassava12169.valid.m1
I
0.837
cassava6876.valid.m1
Manihot esculenta
cassava6876.valid.m1
I
0.837
MTR_3g100050
Medicago truncatula
MTR_3g100050
I
0.806
MTR_4g008070
Medicago truncatula
MTR_4g008070
I
0.815
mgf016112m
Mimulus guttatus
mgf016112m
I
0.843
GSMUA_Achr10G06260_001
Musa acuminata
GSMUA_Achr10G06260_001
I
0.843
GSMUA_Achr2G04520_001
Musa acuminata
GSMUA_Achr2G04520_001
I
0.848
GSMUA_Achr3G05620_001
Musa acuminata
GSMUA_Achr3G05620_001
I
0.862
GSMUA_Achr7G08720_001
Musa acuminata
GSMUA_Achr7G08720_001
I
0.843
GSMUA_Achr9G13870_001
Musa acuminata
GSMUA_Achr9G13870_001
I
0.847
OBART02G03780
Oryza barthii
OBART02G03780
I
0.857
OBART06G26250
Oryza barthii
OBART06G26250
I
0.862
OB02G13220
Oryza brachyantha
OB02G13220
I
0.857
OB06G33840
Oryza brachyantha
OB06G33840
I
0.857
ORGLA02G0035000
Oryza glaberrima
ORGLA02G0035000
I
0.857
ORGLA06G0219100
Oryza glaberrima
ORGLA06G0219100
I
0.862
OGLUM02G03560
Oryza glumaepatula
OGLUM02G03560
I
0.857
OGLUM06G27650
Oryza glumaepatula
OGLUM06G27650
I
0.862
BGIOSGA007539
Oryza indica
BGIOSGA007539
I
0.857
BGIOSGA020596
Oryza indica
BGIOSGA020596
I
0.861
OLONG_015069
Oryza longistaminata
OLONG_015069
I
0.862
OMERI02G04610
Oryza meridionalis
OMERI02G04610
I
0.857
OMERI06G26410
Oryza meridionalis
OMERI06G26410
I
0.861
ONIVA02G03810
Oryza nivara
ONIVA02G03810
I
0.857
ONIVA06G28780
Oryza nivara
ONIVA06G28780
I
0.862
OPUNC02G02970
Oryza punctata
OPUNC02G02970
I
0.862
OPUNC06G23830
Oryza punctata
OPUNC06G23830
I
0.862
ORUFI02G03830
Oryza rufipogon
ORUFI02G03830
I
0.857
ORUFI06G28170
Oryza rufipogon
ORUFI06G28170
I
0.862
GATA17
Oryza sativa
OS02G0148500
I
0.857
OS06G0698900
Oryza sativa
OS06G0698900
D
0.862
Pavir.Da00166
Panicum virgatum
Pavir.Da00166
I
0.862
Pavir.Db00254
Panicum virgatum
Pavir.Db00254
I
0.862
PDK_20s1340921g001
Phoenix dactylifera
PDK_20s1340921g001
I
0.857
PDK_20s1879741g001
Phoenix dactylifera
PDK_20s1879741g001
I
0.862
e_gw1.226.30.1
Physcomitrella patens
e_gw1.226.30.1
I
0.847
fgenesh1_pm.scaffold_69000012
Physcomitrella patens
fgenesh1_pm.scaffold_69000012
I
0.847
fgenesh2_pm.scaffold_111000001
Physcomitrella patens
fgenesh2_pm.scaffold_111000001
I
0.847
gw1.68.123.1
Physcomitrella patens
gw1.68.123.1
I
0.847
POPTR_0007s03130
Populus trichocarpa
POPTR_0007s03130
I
0.832
POPTR_0010s25810
Populus trichocarpa
POPTR_0010s25810
I
0.847
POPTR_0017s06980
Populus trichocarpa
POPTR_0017s06980
I
0.831
Pm013048
Prunus mume
Pm013048
I
0.862
Pm022163
Prunus mume
Pm022163
I
0.832
PRUPE_ppa009401mg
Prunus persica
PRUPE_ppa009401mg
I
0.832
PRUPE_ppa009709mg
Prunus persica
PRUPE_ppa009709mg
I
0.862
29838.m001724
Ricinus communis
29838.m001724
I
0.832
SapurV1A.0036s1170
Salix purpurea
SapurV1A.0036s1170
I
0.847
SapurV1A.0187s0150
Salix purpurea
SapurV1A.0187s0150
I
0.832
SELMODRAFT_177195
Selaginella moellendorffii
SELMODRAFT_177195
I
0.851
SELMODRAFT_423855
Selaginella moellendorffii
SELMODRAFT_423855
I
0.851
Si006750m.g
Setaria italica
Si006750m.g
I
0.862
Sb10g028750
Sorghum bicolor
Sb10g028750
I
0.867
TCM_007360
Theobroma cacao
TCM_007360
I
0.832
TCM_027858
Theobroma cacao
TCM_027858
I
0.847
Traes_6AS_4106E8E28
Triticum aestivum
Traes_6AS_4106E8E28
I
0.843
Traes_6BS_AB5909D02
Triticum aestivum
Traes_6BS_AB5909D02
I
0.843
Traes_6DS_6268D31AE
Triticum aestivum
Traes_6DS_6268D31AE
I
0.843
Traes_7AL_EA6F4FFDE
Triticum aestivum
Traes_7AL_EA6F4FFDE
I
0.856
Traes_7DL_A5ECEDA95
Triticum aestivum
Traes_7DL_A5ECEDA95
I
0.856
TRIUR3_11107
Triticum urartu
TRIUR3_11107
I
0.856
TRIUR3_32095
Triticum urartu
TRIUR3_32095
I
0.843
VIT_09s0054g00440
Vitis vinifera
VIT_09s0054g00440
I
0.847
GRMZM2G080509
Zea mays
GRMZM2G080509
I
0.862