CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G379005
(
Zea mays
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
GRMZM2G379005
T193570_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA6
M01999_2.00
Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN
PBM
Weirauch et al.(2014)
pTH7317
0.857
0.833
GATA6
M06890_2.00
Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR
Dap-seq
OMalley et al.(2016)
GATA6_col200_a
0.857
0.833
Q76DY3_TOBAC
M10600_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGP1_01
0.851
0.889
GATA1
M01998_2.00
Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN
PBM
Weirauch et al.(2014)
pTH8144
0.851
0.861
GATA1
M06887_2.00
Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY
Dap-seq
OMalley et al.(2016)
GATA1_col_a
0.851
0.861
GATA1
M06888_2.00
Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND
Dap-seq
OMalley et al.(2016)
GATA1_colamp_a
0.851
0.861
GATA4
M00727_2.00
Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN
PBM
Chang et al.(2013)
pTH7196
0.848
0.889
GATA4
M06891_2.00
Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND
Dap-seq
OMalley et al.(2016)
GATA4_col_a
0.848
0.889
GATA9
M02002_2.00
Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN
PBM
Weirauch et al.(2014)
pTH7378
0.837
0.833
GATA8
M02000_2.00
Arabidopsis thaliana
NNGATYYVN
NBRRATCNN
PBM
Weirauch et al.(2014)
pTH7665
0.832
0.833
GATA12
M00863_2.00
Arabidopsis thaliana
NNNGATBN
NVATCNNN
PBM
Franco-Zorrilla et al.(2014)
GATA12
0.832
0.806
GATA12
M06895_2.00
Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH
Dap-seq
OMalley et al.(2016)
GATA12_col_a
0.832
0.806
GATA12
M06896_2.00
Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR
Dap-seq
OMalley et al.(2016)
GATA12_colamp_a
0.832
0.806
GATA7
M02004_2.00
Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN
PBM
Weirauch et al.(2014)
pTH7658
0.830
0.778
GATA10
M01994_2.00
Arabidopsis thaliana
CAGATCTA
TAGATCTG
PBM
Weirauch et al.(2014)
pTH7615
0.819
0.778
GATA11
M01995_2.00
Arabidopsis thaliana
CAGATCTH
DAGATCTG
PBM
Weirauch et al.(2014)
pTH7486
0.819
0.778
GATA11
M06882_2.00
Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD
Dap-seq
OMalley et al.(2016)
GATA11_col_a
0.819
0.778
GATA3
M02003_2.00
Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN
PBM
Weirauch et al.(2014)
pTH7657
0.819
0.750
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G379005_P01
GATA
218
253
CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGRLF
GRMZM2G379005_P02
GATA
322
357
CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGRLF
GRMZM2G379005_P03
GATA
322
357
CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGRLF
GRMZM2G379005_P04
GATA
322
357
CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGRLF
GRMZM2G379005_P05
GATA
228
263
CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGRLF
Links
Other
GATA
family TFs
Other
Zea mays
TFs
610 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy