CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OB01G55040
(
Oryza brachyantha
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
OB01G55040
T194331_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.811
0.833
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OB01G55040.1
GATA
24
59
CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRRA
Links
Other
GATA
family TFs
Other
Oryza brachyantha
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29889.m003248
Ricinus communis
29889.m003248
I
0.814
30128.m008883
Ricinus communis
30128.m008883
N
0.814
AMTR_s00025p00250380
Amborella trichopoda
AMTR_s00025p00250380
N
0.809
AMTR_s00147p00053080
Amborella trichopoda
AMTR_s00147p00053080
N
0.842
BGIOSGA000005
Oryza indica
BGIOSGA000005
I
0.867
BGIOSGA013867
Oryza indica
BGIOSGA013867
I
0.829
BGIOSGA013869
Oryza indica
BGIOSGA013869
I
0.829
Bo00847s050
Brassica oleracea
Bo00847s050
I
0.811
Bostr.15774s0060
Boechera stricta
Bostr.15774s0060
I
0.811
Bra020650
Brassica rapa
Bra020650
I
0.838
BRADI1G03020
Brachypodium distachyon
BRADI1G03020
I
0.829
BRADI2G62660
Brachypodium distachyon
BRADI2G62660
I
0.856
Carubv10027332m.g
Capsella rubella
Carubv10027332m.g
I
0.811
cassava15577.m1
Manihot esculenta
cassava15577.m1
I
0.829
cassava15588.m1
Manihot esculenta
cassava15588.m1
I
0.829
cassava37139.valid.m1
Manihot esculenta
cassava37139.valid.m1
I
0.814
cassava43030.valid.m1
Manihot esculenta
cassava43030.valid.m1
I
0.811
Ca_02992
Cicer arietinum
Ca_02992
I
0.810
Ciclev10003698m.g
Citrus clementina
Ciclev10003698m.g
I
0.814
Ciclev10006161m.g
Citrus clementina
Ciclev10006161m.g
I
0.816
Ciclev10022856m.g
Citrus clementina
Ciclev10022856m.g
I
0.828
Cla005266
Citrullus lanatus
Cla005266
N
0.828
Cla009422
Citrullus lanatus
Cla009422
I
0.816
Cla022104
Citrullus lanatus
Cla022104
I
0.811
CME102C
Cyanidioschyzon merolae
CME102C
N
0.805
Cucsa.069460
Cucumis sativus
Cucsa.069460
I
0.816
Cucsa.252730
Cucumis sativus
Cucsa.252730
I
0.811
Eucgr.A00193
Eucalyptus grandis
Eucgr.A00193
I
0.811
Eucgr.H04023
Eucalyptus grandis
Eucgr.H04023
I
0.816
evm.TU.supercontig_151.51
Carica papaya
evm.TU.supercontig_151.51
I
0.829
evm.TU.supercontig_48.133
Carica papaya
evm.TU.supercontig_48.133
I
0.829
evm.TU.supercontig_9.102
Carica papaya
evm.TU.supercontig_9.102
I
0.811
GATA16
Arabidopsis thaliana
AT5G49300
D
0.811
GATA16
Arabidopsis lyrata
scaffold_801309.1
I
0.811
gene05175-v1.0-hybrid
Fragaria vesca
gene05175-v1.0-hybrid
I
0.811
GLYMA07G37190
Glycine max
GLYMA07G37190
I
0.814
GLYMA17G03410
Glycine max
GLYMA17G03410
I
0.814
Gorai.005G065300
Gossypium raimondii
Gorai.005G065300
I
0.811
Gorai.007G125000
Gossypium raimondii
Gorai.007G125000
I
0.828
Gorai.008G142200
Gossypium raimondii
Gorai.008G142200
I
0.814
Gorai.013G127900
Gossypium raimondii
Gorai.013G127900
I
0.829
Gorai.013G206400
Gossypium raimondii
Gorai.013G206400
N
0.842
GRMZM2G138967
Zea mays
GRMZM2G138967
N
0.825
GSMUA_Achr1G14780_001
Musa acuminata
GSMUA_Achr1G14780_001
N
0.814
GSMUA_Achr7G03800_001
Musa acuminata
GSMUA_Achr7G03800_001
N
0.809
GSMUA_Achr8G33850_001
Musa acuminata
GSMUA_Achr8G33850_001
N
0.815
LjSGA_011217.1
Lotus japonicus
LjSGA_011217.1
I
0.810
LPERR03G33900
Leersia perrieri
LPERR03G33900
I
0.829
LPERR04G11580
Leersia perrieri
LPERR04G11580
I
0.867
Lus10016849.g
Linum usitatissimum
Lus10016849.g
I
0.811
Lus10020684.g
Linum usitatissimum
Lus10020684.g
N
0.823
Lus10029863.g
Linum usitatissimum
Lus10029863.g
N
0.823
Lus10031464.g
Linum usitatissimum
Lus10031464.g
I
0.809
Lus10037721.g
Linum usitatissimum
Lus10037721.g
I
0.811
MDP0000309902
Malus domestica
MDP0000309902
I
0.809
mgf003937m
Mimulus guttatus
mgf003937m
I
0.811
mgf011737m
Mimulus guttatus
mgf011737m
N
0.814
mgf022078m
Mimulus guttatus
mgf022078m
I
0.815
MLOC_54886
Hordeum vulgare
MLOC_54886
I
0.856
MTR_4g121110
Medicago truncatula
MTR_4g121110
I
0.810
OBART01G45830
Oryza barthii
OBART01G45830
I
0.867
OBART03G39750
Oryza barthii
OBART03G39750
I
0.829
OGLUM01G50190
Oryza glumaepatula
OGLUM01G50190
I
0.867
OGLUM03G39650
Oryza glumaepatula
OGLUM03G39650
I
0.829
OLONG_011157
Oryza longistaminata
OLONG_011157
I
0.867
OLONG_023900
Oryza longistaminata
OLONG_023900
I
0.829
OMERI03G36600
Oryza meridionalis
OMERI03G36600
I
0.829
ONIVA01G52080
Oryza nivara
ONIVA01G52080
I
0.867
ONIVA03G41600
Oryza nivara
ONIVA03G41600
I
0.829
OPUNC03G36900
Oryza punctata
OPUNC03G36900
I
0.829
OPUNC03G36910
Oryza punctata
OPUNC03G36910
I
0.829
orange1.1g030971m.g
Citrus sinensis
orange1.1g030971m.g
I
0.814
orange1.1g032112m.g
Citrus sinensis
orange1.1g032112m.g
I
0.816
orange1.1g033001m.g
Citrus sinensis
orange1.1g033001m.g
I
0.828
ORGLA01G0395900
Oryza glaberrima
ORGLA01G0395900
I
0.867
ORUFI01G49320
Oryza rufipogon
ORUFI01G49320
I
0.867
ORUFI03G41540
Oryza rufipogon
ORUFI03G41540
I
0.829
OS01G0976800
Oryza sativa
OS01G0976800
I
0.867
OS03G0831200
Oryza sativa
OS03G0831200
I
0.829
Pavir.Ab00108
Panicum virgatum
Pavir.Ab00108
N
0.825
Pavir.Eb04066
Panicum virgatum
Pavir.Eb04066
I
0.856
PGSC0003DMG400004624
Solanum tuberosum
PGSC0003DMG400004624
I
0.816
PK18820.1
Cannabis sativa
PK18820.1
I
0.816
PK21934.1
Cannabis sativa
PK21934.1
I
0.814
Pm003128
Prunus mume
Pm003128
I
0.841
Pm008287
Prunus mume
Pm008287
I
0.811
POPTR_0005s02040
Populus trichocarpa
POPTR_0005s02040
I
0.829
POPTR_0008s22950
Populus trichocarpa
POPTR_0008s22950
I
0.810
POPTR_0010s00360
Populus trichocarpa
POPTR_0010s00360
I
0.810
PRUPE_ppa013171mg
Prunus persica
PRUPE_ppa013171mg
I
0.811
PRUPE_ppa015310mg
Prunus persica
PRUPE_ppa015310mg
I
0.841
SapurV1A.0107s0060
Salix purpurea
SapurV1A.0107s0060
I
0.829
SapurV1A.0186s0560
Salix purpurea
SapurV1A.0186s0560
I
0.829
SapurV1A.0739s0060
Salix purpurea
SapurV1A.0739s0060
I
0.810
SapurV1A.2413s0010
Salix purpurea
SapurV1A.2413s0010
I
0.810
Sb03g047520
Sorghum bicolor
Sb03g047520
I
0.856
Si002983m.g
Setaria italica
Si002983m.g
I
0.856
Solyc12g099370.1
Solanum lycopersicum
Solyc12g099370.1
I
0.816
TCM_004753
Theobroma cacao
TCM_004753
I
0.814
TCM_021303
Theobroma cacao
TCM_021303
I
0.811
TCM_026732
Theobroma cacao
TCM_026732
I
0.829
Thhalv10005103m.g
Eutrema salsugineum
Thhalv10005103m.g
I
0.811
TRAES3BF026000060CFD_g
Triticum aestivum
TRAES3BF026000060CFD_g
I
0.856
Traes_3AL_6DE434492
Triticum aestivum
Traes_3AL_6DE434492
I
0.856
TRIUR3_03165
Triticum urartu
TRIUR3_03165
I
0.856
VIT_05s0077g01450
Vitis vinifera
VIT_05s0077g01450
I
0.816
VIT_14s0060g01520
Vitis vinifera
VIT_14s0060g01520
I
0.856