CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm003128
(
Prunus mume
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Pm003128
T195950_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.810
0.722
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm003128
GATA
8
43
CSDCMTTETPLWRGGPAGPKSLCNACGIRHRKRGIP
Links
Other
GATA
family TFs
Other
Prunus mume
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29889.m003248
Ricinus communis
29889.m003248
I
0.825
30128.m008883
Ricinus communis
30128.m008883
N
0.811
AMTR_s00147p00053080
Amborella trichopoda
AMTR_s00147p00053080
N
0.838
Aquca_003_00608
Aquilegia coerulea
Aquca_003_00608
N
0.825
GATA17
Arabidopsis thaliana
AT3G16870
I
0.806
AT4G16141
Arabidopsis thaliana
AT4G16141
I
0.806
GATA16
Arabidopsis thaliana
AT5G49300
D
0.810
BGIOSGA000005
Oryza indica
BGIOSGA000005
I
0.841
BGIOSGA013867
Oryza indica
BGIOSGA013867
I
0.814
BGIOSGA013869
Oryza indica
BGIOSGA013869
I
0.814
Bo00847s050
Brassica oleracea
Bo00847s050
I
0.821
Bo1g055120
Brassica oleracea
Bo1g055120
I
0.806
Bo1g122970
Brassica oleracea
Bo1g122970
I
0.806
Bo3g068560
Brassica oleracea
Bo3g068560
I
0.806
Bo5g123610
Brassica oleracea
Bo5g123610
I
0.806
Bo7g104200
Brassica oleracea
Bo7g104200
I
0.806
Bostr.15774s0060
Boechera stricta
Bostr.15774s0060
I
0.821
Bostr.28625s0006
Boechera stricta
Bostr.28625s0006
I
0.806
Bostr.30275s0055
Boechera stricta
Bostr.30275s0055
I
0.806
Bra012742
Brassica rapa
Bra012742
I
0.806
Bra020650
Brassica rapa
Bra020650
I
0.847
Bra021209
Brassica rapa
Bra021209
I
0.806
Bra022184
Brassica rapa
Bra022184
I
0.806
Bra033533
Brassica rapa
Bra033533
I
0.806
BRADI1G03020
Brachypodium distachyon
BRADI1G03020
I
0.814
BRADI2G62660
Brachypodium distachyon
BRADI2G62660
I
0.841
Cagra.0053s0014
Capsella grandiflora
Cagra.0053s0014
I
0.806
Cagra.5497s0020
Capsella grandiflora
Cagra.5497s0020
I
0.806
Carubv10005860m.g
Capsella rubella
Carubv10005860m.g
I
0.806
Carubv10014665m.g
Capsella rubella
Carubv10014665m.g
I
0.806
Carubv10027332m.g
Capsella rubella
Carubv10027332m.g
I
0.821
cassava15577.m1
Manihot esculenta
cassava15577.m1
I
0.825
cassava15588.m1
Manihot esculenta
cassava15588.m1
I
0.825
cassava37139.valid.m1
Manihot esculenta
cassava37139.valid.m1
I
0.825
cassava43030.valid.m1
Manihot esculenta
cassava43030.valid.m1
I
0.821
Ca_02992
Cicer arietinum
Ca_02992
I
0.821
Ciclev10003698m.g
Citrus clementina
Ciclev10003698m.g
I
0.825
Ciclev10006161m.g
Citrus clementina
Ciclev10006161m.g
I
0.825
Ciclev10022856m.g
Citrus clementina
Ciclev10022856m.g
I
0.825
Cla005266
Citrullus lanatus
Cla005266
N
0.827
Cla009422
Citrullus lanatus
Cla009422
I
0.825
Cla022104
Citrullus lanatus
Cla022104
I
0.821
CME102C
Cyanidioschyzon merolae
CME102C
N
0.802
Cucsa.069460
Cucumis sativus
Cucsa.069460
I
0.825
Cucsa.252730
Cucumis sativus
Cucsa.252730
I
0.821
Eucgr.A00193
Eucalyptus grandis
Eucgr.A00193
I
0.821
Eucgr.H04023
Eucalyptus grandis
Eucgr.H04023
I
0.825
evm.TU.supercontig_151.51
Carica papaya
evm.TU.supercontig_151.51
I
0.825
evm.TU.supercontig_48.133
Carica papaya
evm.TU.supercontig_48.133
I
0.825
evm.TU.supercontig_9.102
Carica papaya
evm.TU.supercontig_9.102
I
0.821
fgenesh1_pm.C_scaffold_7002128
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7002128
I
0.806
GATA17
Arabidopsis lyrata
fgenesh2_kg.3__1856__AT3G16870.1
I
0.806
gene05175-v1.0-hybrid
Fragaria vesca
gene05175-v1.0-hybrid
I
0.821
GLYMA07G37190
Glycine max
GLYMA07G37190
I
0.825
GLYMA17G03410
Glycine max
GLYMA17G03410
I
0.825
Gorai.005G065300
Gossypium raimondii
Gorai.005G065300
I
0.821
Gorai.007G125000
Gossypium raimondii
Gorai.007G125000
I
0.825
Gorai.008G142200
Gossypium raimondii
Gorai.008G142200
I
0.825
Gorai.013G127900
Gossypium raimondii
Gorai.013G127900
I
0.825
Gorai.013G206400
Gossypium raimondii
Gorai.013G206400
N
0.827
GRMZM2G138967
Zea mays
GRMZM2G138967
N
0.810
LjSGA_011217.1
Lotus japonicus
LjSGA_011217.1
I
0.821
LPERR03G33900
Leersia perrieri
LPERR03G33900
I
0.814
LPERR04G11580
Leersia perrieri
LPERR04G11580
I
0.841
Lus10016849.g
Linum usitatissimum
Lus10016849.g
I
0.821
Lus10020684.g
Linum usitatissimum
Lus10020684.g
N
0.847
Lus10029863.g
Linum usitatissimum
Lus10029863.g
N
0.847
Lus10031464.g
Linum usitatissimum
Lus10031464.g
I
0.807
Lus10037721.g
Linum usitatissimum
Lus10037721.g
I
0.821
MDP0000309902
Malus domestica
MDP0000309902
I
0.807
mgf003937m
Mimulus guttatus
mgf003937m
I
0.821
mgf011737m
Mimulus guttatus
mgf011737m
N
0.826
MLOC_54886
Hordeum vulgare
MLOC_54886
I
0.841
MTR_4g121110
Medicago truncatula
MTR_4g121110
I
0.821
OB01G55040
Oryza brachyantha
OB01G55040
I
0.841
OBART01G45830
Oryza barthii
OBART01G45830
I
0.841
OBART03G39750
Oryza barthii
OBART03G39750
I
0.814
OGLUM01G50190
Oryza glumaepatula
OGLUM01G50190
I
0.841
OGLUM03G39650
Oryza glumaepatula
OGLUM03G39650
I
0.814
OLONG_011157
Oryza longistaminata
OLONG_011157
I
0.841
OLONG_023900
Oryza longistaminata
OLONG_023900
I
0.814
OMERI03G36600
Oryza meridionalis
OMERI03G36600
I
0.814
ONIVA01G52080
Oryza nivara
ONIVA01G52080
I
0.841
ONIVA03G41600
Oryza nivara
ONIVA03G41600
I
0.814
OPUNC03G36900
Oryza punctata
OPUNC03G36900
I
0.814
OPUNC03G36910
Oryza punctata
OPUNC03G36910
I
0.814
orange1.1g030971m.g
Citrus sinensis
orange1.1g030971m.g
I
0.825
orange1.1g032112m.g
Citrus sinensis
orange1.1g032112m.g
I
0.825
orange1.1g033001m.g
Citrus sinensis
orange1.1g033001m.g
I
0.825
ORGLA01G0395900
Oryza glaberrima
ORGLA01G0395900
I
0.841
ORUFI01G49320
Oryza rufipogon
ORUFI01G49320
I
0.841
ORUFI03G41540
Oryza rufipogon
ORUFI03G41540
I
0.814
OS01G0976800
Oryza sativa
OS01G0976800
I
0.841
OS03G0831200
Oryza sativa
OS03G0831200
I
0.814
Pavir.Ab00108
Panicum virgatum
Pavir.Ab00108
N
0.810
Pavir.Eb04066
Panicum virgatum
Pavir.Eb04066
I
0.841
PGSC0003DMG400004624
Solanum tuberosum
PGSC0003DMG400004624
I
0.825
PGSC0003DMG400023434
Solanum tuberosum
PGSC0003DMG400023434
I
0.811
PK18820.1
Cannabis sativa
PK18820.1
I
0.825
PK21934.1
Cannabis sativa
PK21934.1
I
0.811
Pm008287
Prunus mume
Pm008287
I
0.821
POPTR_0005s02040
Populus trichocarpa
POPTR_0005s02040
I
0.825
POPTR_0008s22950
Populus trichocarpa
POPTR_0008s22950
I
0.821
POPTR_0010s00360
Populus trichocarpa
POPTR_0010s00360
I
0.821
PRUPE_ppa013171mg
Prunus persica
PRUPE_ppa013171mg
I
0.821
PRUPE_ppa015310mg
Prunus persica
PRUPE_ppa015310mg
I
0.867
SapurV1A.0107s0060
Salix purpurea
SapurV1A.0107s0060
I
0.825
SapurV1A.0186s0560
Salix purpurea
SapurV1A.0186s0560
I
0.825
SapurV1A.0739s0060
Salix purpurea
SapurV1A.0739s0060
I
0.821
SapurV1A.2413s0010
Salix purpurea
SapurV1A.2413s0010
I
0.821
Sb03g047520
Sorghum bicolor
Sb03g047520
I
0.841
GATA16
Arabidopsis lyrata
scaffold_801309.1
I
0.821
Si002983m.g
Setaria italica
Si002983m.g
I
0.841
Solyc05g054400.2
Solanum lycopersicum
Solyc05g054400.2
I
0.811
Solyc12g099370.1
Solanum lycopersicum
Solyc12g099370.1
I
0.825
TCM_004753
Theobroma cacao
TCM_004753
I
0.839
TCM_021303
Theobroma cacao
TCM_021303
I
0.821
TCM_026732
Theobroma cacao
TCM_026732
I
0.825
Thhalv10005103m.g
Eutrema salsugineum
Thhalv10005103m.g
I
0.821
Thhalv10021612m.g
Eutrema salsugineum
Thhalv10021612m.g
I
0.806
Thhalv10026300m.g
Eutrema salsugineum
Thhalv10026300m.g
I
0.806
TRAES3BF026000060CFD_g
Triticum aestivum
TRAES3BF026000060CFD_g
I
0.841
Traes_3AL_6DE434492
Triticum aestivum
Traes_3AL_6DE434492
I
0.841
TRIUR3_03165
Triticum urartu
TRIUR3_03165
I
0.841
VIT_05s0077g01450
Vitis vinifera
VIT_05s0077g01450
I
0.825
VIT_14s0060g01520
Vitis vinifera
VIT_14s0060g01520
I
0.852