CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29838.m001724
(
Ricinus communis
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
29838.m001724
T195994_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN
NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.848
0.833
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.848
0.833
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN
NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.837
0.833
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN
NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.837
0.833
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.815
0.889
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29838.m001724
GATA
221
258
CTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGIL
Links
Other
GATA
family TFs
Other
Ricinus communis
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_007_00522
Aquilegia coerulea
Aquca_007_00522
I
0.852
Aquca_010_00250
Aquilegia coerulea
Aquca_010_00250
I
0.848
Aquca_018_00034
Aquilegia coerulea
Aquca_018_00034
I
0.842
BGIOSGA007539
Oryza indica
BGIOSGA007539
I
0.842
BGIOSGA020596
Oryza indica
BGIOSGA020596
I
0.836
Bo1g039000
Brassica oleracea
Bo1g039000
I
0.815
Bo1g108240
Brassica oleracea
Bo1g108240
I
0.837
Bo3g181450
Brassica oleracea
Bo3g181450
I
0.837
Bo5g103560
Brassica oleracea
Bo5g103560
I
0.837
Bostr.26675s0048
Boechera stricta
Bostr.26675s0048
I
0.837
Bostr.7867s0254
Boechera stricta
Bostr.7867s0254
I
0.815
Bra013805
Brassica rapa
Bra013805
I
0.815
Bra014292
Brassica rapa
Bra014292
I
0.836
Bra023900
Brassica rapa
Bra023900
I
0.837
Bra031258
Brassica rapa
Bra031258
I
0.837
BRADI1G33980
Brachypodium distachyon
BRADI1G33980
I
0.837
BRADI3G03800
Brachypodium distachyon
BRADI3G03800
I
0.823
Cagra.1757s0004
Capsella grandiflora
Cagra.1757s0004
I
0.837
Cagra.2171s0014
Capsella grandiflora
Cagra.2171s0014
I
0.815
Cagra.2346s0015
Capsella grandiflora
Cagra.2346s0015
I
0.842
Carubv10006355m.g
Capsella rubella
Carubv10006355m.g
I
0.815
Carubv10009866m.g
Capsella rubella
Carubv10009866m.g
I
0.842
Carubv10016131m.g
Capsella rubella
Carubv10016131m.g
I
0.837
cassava12169.valid.m1
Manihot esculenta
cassava12169.valid.m1
I
0.862
cassava6876.valid.m1
Manihot esculenta
cassava6876.valid.m1
I
0.862
Ca_01471
Cicer arietinum
Ca_01471
I
0.810
Ca_17522
Cicer arietinum
Ca_17522
I
0.842
Ciclev10027306m.g
Citrus clementina
Ciclev10027306m.g
I
0.842
Cla013127
Citrullus lanatus
Cla013127
I
0.861
Cla015736
Citrullus lanatus
Cla015736
I
0.840
Cucsa.218190
Cucumis sativus
Cucsa.218190
I
0.862
Cucsa.359570
Cucumis sativus
Cucsa.359570
I
0.842
Eucgr.J03166
Eucalyptus grandis
Eucgr.J03166
I
0.842
evm.TU.supercontig_155.28
Carica papaya
evm.TU.supercontig_155.28
I
0.840
e_gw1.226.30.1
Physcomitrella patens
e_gw1.226.30.1
I
0.848
F775_08559
Aegilops tauschii
F775_08559
I
0.842
fgenesh1_pm.scaffold_69000012
Physcomitrella patens
fgenesh1_pm.scaffold_69000012
I
0.848
fgenesh2_pm.scaffold_111000001
Physcomitrella patens
fgenesh2_pm.scaffold_111000001
I
0.848
GATA17
Oryza sativa
OS02G0148500
I
0.842
GATA24
Arabidopsis thaliana
AT3G21175
D
0.837
GATA28
Arabidopsis thaliana
AT1G51600
D
0.848
GLYMA08G23720
Glycine max
GLYMA08G23720
I
0.842
Gorai.008G017800
Gossypium raimondii
Gorai.008G017800
I
0.867
GRMZM2G058479
Zea mays
GRMZM2G058479
I
0.832
GRMZM2G080509
Zea mays
GRMZM2G080509
I
0.837
GSMUA_Achr10G06260_001
Musa acuminata
GSMUA_Achr10G06260_001
I
0.842
GSMUA_Achr2G04520_001
Musa acuminata
GSMUA_Achr2G04520_001
I
0.837
GSMUA_Achr3G05620_001
Musa acuminata
GSMUA_Achr3G05620_001
I
0.837
GSMUA_Achr7G08720_001
Musa acuminata
GSMUA_Achr7G08720_001
I
0.842
GSMUA_Achr9G13870_001
Musa acuminata
GSMUA_Achr9G13870_001
I
0.842
gw1.68.123.1
Physcomitrella patens
gw1.68.123.1
I
0.848
LjSGA_067759.1
Lotus japonicus
LjSGA_067759.1
I
0.809
LPERR02G03330
Leersia perrieri
LPERR02G03330
I
0.842
LPERR06G21800
Leersia perrieri
LPERR06G21800
I
0.842
LPERR11G14110
Leersia perrieri
LPERR11G14110
I
0.840
mgf016112m
Mimulus guttatus
mgf016112m
I
0.851
MLOC_17061
Hordeum vulgare
MLOC_17061
I
0.832
MLOC_3107
Hordeum vulgare
MLOC_3107
I
0.842
MTR_3g100050
Medicago truncatula
MTR_3g100050
I
0.815
MTR_4g008070
Medicago truncatula
MTR_4g008070
I
0.810
OB02G13220
Oryza brachyantha
OB02G13220
I
0.837
OB06G33840
Oryza brachyantha
OB06G33840
I
0.842
OBART02G03780
Oryza barthii
OBART02G03780
I
0.842
OBART06G26250
Oryza barthii
OBART06G26250
I
0.837
OGLUM02G03560
Oryza glumaepatula
OGLUM02G03560
I
0.842
OGLUM06G27650
Oryza glumaepatula
OGLUM06G27650
I
0.837
OLONG_015069
Oryza longistaminata
OLONG_015069
I
0.837
OMERI02G04610
Oryza meridionalis
OMERI02G04610
I
0.842
OMERI06G26410
Oryza meridionalis
OMERI06G26410
I
0.836
ONIVA02G03810
Oryza nivara
ONIVA02G03810
I
0.842
ONIVA06G28780
Oryza nivara
ONIVA06G28780
I
0.837
OPUNC02G02970
Oryza punctata
OPUNC02G02970
I
0.837
OPUNC06G23830
Oryza punctata
OPUNC06G23830
I
0.837
orange1.1g022728m.g
Citrus sinensis
orange1.1g022728m.g
I
0.842
ORGLA02G0035000
Oryza glaberrima
ORGLA02G0035000
I
0.842
ORGLA06G0219100
Oryza glaberrima
ORGLA06G0219100
I
0.837
ORUFI02G03830
Oryza rufipogon
ORUFI02G03830
I
0.842
ORUFI06G28170
Oryza rufipogon
ORUFI06G28170
I
0.837
OS06G0698900
Oryza sativa
OS06G0698900
D
0.837
Pavir.Da00166
Panicum virgatum
Pavir.Da00166
I
0.837
Pavir.Db00254
Panicum virgatum
Pavir.Db00254
I
0.837
PDK_20s1340921g001
Phoenix dactylifera
PDK_20s1340921g001
I
0.842
PDK_20s1879741g001
Phoenix dactylifera
PDK_20s1879741g001
I
0.837
PK11000.1
Cannabis sativa
PK11000.1
I
0.831
Pm013048
Prunus mume
Pm013048
I
0.837
Pm022163
Prunus mume
Pm022163
I
0.867
POPTR_0007s03130
Populus trichocarpa
POPTR_0007s03130
I
0.856
POPTR_0010s25810
Populus trichocarpa
POPTR_0010s25810
I
0.842
POPTR_0017s06980
Populus trichocarpa
POPTR_0017s06980
I
0.856
PRUPE_ppa009401mg
Prunus persica
PRUPE_ppa009401mg
I
0.867
PRUPE_ppa009709mg
Prunus persica
PRUPE_ppa009709mg
I
0.837
SapurV1A.0036s1170
Salix purpurea
SapurV1A.0036s1170
I
0.842
SapurV1A.0187s0150
Salix purpurea
SapurV1A.0187s0150
I
0.856
Sb10g028750
Sorghum bicolor
Sb10g028750
I
0.832
SELMODRAFT_177195
Selaginella moellendorffii
SELMODRAFT_177195
I
0.832
SELMODRAFT_423855
Selaginella moellendorffii
SELMODRAFT_423855
I
0.832
Si006750m.g
Setaria italica
Si006750m.g
I
0.837
TCM_007360
Theobroma cacao
TCM_007360
I
0.856
TCM_027858
Theobroma cacao
TCM_027858
I
0.842
Thhalv10011695m.g
Eutrema salsugineum
Thhalv10011695m.g
I
0.837
Thhalv10020970m.g
Eutrema salsugineum
Thhalv10020970m.g
I
0.842
Thhalv10025795m.g
Eutrema salsugineum
Thhalv10025795m.g
I
0.815
TIFY1
Arabidopsis lyrata
fgenesh2_kg.7__1832__AT4G24470.2
I
0.815
Traes_6AS_4106E8E28
Triticum aestivum
Traes_6AS_4106E8E28
I
0.842
Traes_6BS_AB5909D02
Triticum aestivum
Traes_6BS_AB5909D02
I
0.842
Traes_6DS_6268D31AE
Triticum aestivum
Traes_6DS_6268D31AE
I
0.842
Traes_7AL_EA6F4FFDE
Triticum aestivum
Traes_7AL_EA6F4FFDE
I
0.832
Traes_7DL_A5ECEDA95
Triticum aestivum
Traes_7DL_A5ECEDA95
I
0.832
TRIUR3_11107
Triticum urartu
TRIUR3_11107
I
0.832
TRIUR3_32095
Triticum urartu
TRIUR3_32095
I
0.842
VIT_09s0054g00440
Vitis vinifera
VIT_09s0054g00440
I
0.842
ZIM
Arabidopsis thaliana
AT4G24470
D
0.815
ZML1
Arabidopsis lyrata
fgenesh2_kg.3__2338__AT3G21175.1
I
0.842
ZML2
Arabidopsis lyrata
scaffold_104929.1
I
0.848