CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
cassava22621.valid.m1
(
Manihot esculenta
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
cassava22621.valid.m1
T196017_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA6
M01999_2.00
Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN
PBM
Weirauch et al.(2014)
pTH7317
0.862
0.861
GATA6
M06890_2.00
Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR
Dap-seq
OMalley et al.(2016)
GATA6_col200_a
0.862
0.861
GATA1
M01998_2.00
Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN
PBM
Weirauch et al.(2014)
pTH8144
0.851
0.833
GATA1
M06887_2.00
Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY
Dap-seq
OMalley et al.(2016)
GATA1_col_a
0.851
0.833
GATA1
M06888_2.00
Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND
Dap-seq
OMalley et al.(2016)
GATA1_colamp_a
0.851
0.833
Q76DY3_TOBAC
M10600_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGP1_01
0.847
0.806
GATA4
M00727_2.00
Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN
PBM
Chang et al.(2013)
pTH7196
0.843
0.806
GATA4
M06891_2.00
Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND
Dap-seq
OMalley et al.(2016)
GATA4_col_a
0.843
0.806
GATA7
M02004_2.00
Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN
PBM
Weirauch et al.(2014)
pTH7658
0.834
0.833
GATA8
M02000_2.00
Arabidopsis thaliana
NNGATYYVN
NBRRATCNN
PBM
Weirauch et al.(2014)
pTH7665
0.832
0.778
GATA9
M02002_2.00
Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN
PBM
Weirauch et al.(2014)
pTH7378
0.832
0.778
GATA12
M00863_2.00
Arabidopsis thaliana
NNNGATBN
NVATCNNN
PBM
Franco-Zorrilla et al.(2014)
GATA12
0.832
0.778
GATA12
M06895_2.00
Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH
Dap-seq
OMalley et al.(2016)
GATA12_col_a
0.832
0.778
GATA12
M06896_2.00
Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR
Dap-seq
OMalley et al.(2016)
GATA12_colamp_a
0.832
0.778
GATA3
M02003_2.00
Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN
PBM
Weirauch et al.(2014)
pTH7657
0.819
0.778
GATA10
M01994_2.00
Arabidopsis thaliana
CAGATCTA
TAGATCTG
PBM
Weirauch et al.(2014)
pTH7615
0.819
0.750
GATA11
M01995_2.00
Arabidopsis thaliana
CAGATCTH
DAGATCTG
PBM
Weirauch et al.(2014)
pTH7486
0.819
0.722
GATA11
M06882_2.00
Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD
Dap-seq
OMalley et al.(2016)
GATA11_col_a
0.819
0.722
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava22621.valid.m1
GATA
220
255
CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLL
Links
Other
GATA
family TFs
Other
Manihot esculenta
TFs
609 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy