CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgeneshPB_pg.C_70124
(
Phycomyces blakesleeanus
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
estExt_fgeneshPB_pg.C_70124
T196162_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sub-1
M01235_2.00
Neurospora crassa
NVMGATCGRNN
NNYCGATCKBN
PBM
Lambert et al.(2019)
pTH8614
0.856
0.889
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgeneshPB_pg.C_70124
GATA
232
267
CHSCNISETPEWRRGPDGARTLCNACGLHYAKLTRK
Links
Other
GATA
family TFs
Other
Phycomyces blakesleeanus
TFs
200 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
hng3
Drosophila melanogaster
FBgn0035160
D
GA12610
Drosophila pseudoobscura
FBgn0072656
I
GF24067
Drosophila ananassae
FBgn0101061
I
GG14639
Drosophila erecta
FBgn0106895
I
GH16032
Drosophila grimshawi
FBgn0123503
I
GI12295
Drosophila mojavensis
FBgn0135052
I
GL20830
Drosophila persimilis
FBgn0158425
I
GM14252
Drosophila sechellia
FBgn0169178
I
GD13509
Drosophila simulans
FBgn0185220
I
GE20996
Drosophila yakuba
FBgn0238279
I