Pavir.Ab00108 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Ab00108 T196724_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00108.1.p GATA 37 72

Links

Other GATA family TFs
Other Panicum virgatum TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.825
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.836
Pm003128 Prunus mume Pm003128 I 0.810
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.825
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.825
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.829
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.825
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.825
Si002983m.g Setaria italica Si002983m.g I 0.836
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.836
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.810
OS01G0976800 Oryza sativa OS01G0976800 I 0.825
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.825
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.825
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.825
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.825
OBART01G45830 Oryza barthii OBART01G45830 I 0.825
OB01G55040 Oryza brachyantha OB01G55040 I 0.825
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.825
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.825
GSMUA_Achr11G17770_001 Musa acuminata GSMUA_Achr11G17770_001 I 0.809
F775_43556 Aegilops tauschii F775_43556 I 0.829
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.825
Bra020650 Brassica rapa Bra020650 I 0.807
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.825
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.811
GRMZM2G138967 Zea mays GRMZM2G138967 N 0.836
CME102C Cyanidioschyzon merolae CME102C N 0.805
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.811