CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J31164
(
Panicum virgatum
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Pavir.J31164
T196772_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J31164.1.p
GATA
60
95
CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRRQ
Links
Other
GATA
family TFs
Other
Panicum virgatum
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC194965.4_FG004
Zea mays
AC194965.4_FG004
N
0.867
Sb09g004315
Sorghum bicolor
Sb09g004315
N
0.867
Si011269m.g
Setaria italica
Si011269m.g
N
0.867
BRADI2G12590
Brachypodium distachyon
BRADI2G12590
N
0.865
BGIOSGA018779
Oryza indica
BGIOSGA018779
N
0.862
OB05G13650
Oryza brachyantha
OB05G13650
N
0.862
OBART05G03900
Oryza barthii
OBART05G03900
N
0.862
OLONG_020882
Oryza longistaminata
OLONG_020882
N
0.862
OPUNC05G03600
Oryza punctata
OPUNC05G03600
N
0.862
ORGLA05G0036200
Oryza glaberrima
ORGLA05G0036200
N
0.862
OS05G0155400
Oryza sativa
OS05G0155400
N
0.862
BRADI2G35057
Brachypodium distachyon
BRADI2G35057
N
0.853
GRMZM2G052616
Zea mays
GRMZM2G052616
N
0.848
GRMZM2G104390
Zea mays
GRMZM2G104390
N
0.848
LPERR01G13070
Leersia perrieri
LPERR01G13070
N
0.848
OB01G24090
Oryza brachyantha
OB01G24090
N
0.848
OBART01G14380
Oryza barthii
OBART01G14380
N
0.848
OGLUM01G16180
Oryza glumaepatula
OGLUM01G16180
N
0.848
ONIVA04G04160
Oryza nivara
ONIVA04G04160
N
0.848
OPUNC01G14080
Oryza punctata
OPUNC01G14080
N
0.848
ORGLA01G0118700
Oryza glaberrima
ORGLA01G0118700
N
0.848
ORUFI01G16060
Oryza rufipogon
ORUFI01G16060
N
0.848
OS01G0343300
Oryza sativa
OS01G0343300
N
0.848
Sb03g013700
Sorghum bicolor
Sb03g013700
N
0.848
Si004417m.g
Setaria italica
Si004417m.g
N
0.848
Pavir.Ea01306
Panicum virgatum
Pavir.Ea01306
N
0.848
Pavir.Eb02364
Panicum virgatum
Pavir.Eb02364
N
0.848
GATA23
Arabidopsis thaliana
AT5G26930
N
0.827
Bra009926
Brassica rapa
Bra009926
N
0.816
cassava16506.m1
Manihot esculenta
cassava16506.m1
N
0.816
Eucgr.H01071
Eucalyptus grandis
Eucgr.H01071
N
0.814
Pavir.J34225
Panicum virgatum
Pavir.J34225
N
0.450