SMTD_0000548601 (Schistosoma mattheei)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 SMTD_0000548601 T198260_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.664 0.664
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.664 0.664
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.664 0.664
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.664 0.664
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMTD_0000548601-mRNA-1 GCM 248 385

Links

Other GCM family TFs
Other Schistosoma mattheei TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Smp_171130 Schistosoma mansoni Smp_171130 I 1.000
A_07498 Schistosoma haematobium A_07498 I 1.000
SMRZ_0001689701 Schistosoma margrebowiei SMRZ_0001689701 I 1.000
Sjc_0090760 Schistosoma japonicum Sjc_0090760 I 0.984
csin108204 Clonorchis sinensis csin108204 I 0.888
T265_00115 Opisthorchis viverrini T265_00115 I 0.888
D915_04811 Fasciola hepatica D915_04811 I 0.881
ECPE_0000966901 Echinostoma caproni ECPE_0000966901 I 0.867
DILT_0000717101 Diphyllobothrium latum DILT_0000717101 I 0.687
gcm Drosophila melanogaster FBgn0014179 D 0.664
GM12386 Drosophila sechellia FBgn0167323 I 0.664
MCOS_0000650801 Mesocestoides corti MCOS_0000650801 I 0.664
TRE_0001360101 Trichobilharzia regenti TRE_0001360101 I 0.664
PXEA_0000106701 Protopolystoma xenopodis PXEA_0000106701 N 0.662
GK23810 Drosophila willistoni FBgn0225772 I 0.657
SSLN_0001903801 Schistocephalus solidus SSLN_0001903801 I 0.655
GI17574 Drosophila mojavensis FBgn0140318 I 0.642
GJ17916 Drosophila virilis FBgn0205084 I 0.642
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.636
GG24019 Drosophila erecta FBgn0116158 I 0.636
GL19218 Drosophila persimilis FBgn0156817 I 0.636
GE10457 Drosophila yakuba FBgn0228318 I 0.636
GF21907 Drosophila ananassae FBgn0098907 I 0.629
TASK_0000418001 Taenia asiatica TASK_0000418001 N 0.627
GH11056 Drosophila grimshawi FBgn0118537 I 0.621
ECANG7_01805 Echinococcus canadensis ECANG7_01805 N 0.619
EmuJ_000821700 Echinococcus multilocularis EmuJ_000821700 N 0.619
GD22349 Drosophila simulans FBgn0193756 I 0.614
GK23867 Drosophila willistoni FBgn0225829 I 0.612
ACOM031025 Anopheles coluzzii ACOM031025 I 0.609
AMEM005966 Anopheles merus AMEM005966 I 0.609