CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc02g085340.1
(
Solanum lycopersicum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Solyc02g085340.1
T201550_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc02g085340.1.1
GRAS
240
609
LLKSLVECARLAESEPENVVKSLIRLRESVSQQGDPMERVGFYFLEALYNRLSSCQAERTPSIFGTAPEELTLSYKAFNDACPYSKFAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPVSVRISGIPSVVLGNSPSASLLATGNRLRDFAKLLDLNFEFEPILTPVQELNGSSFRVDPDEILAVNFMLQLYNLLDETNVGVKTALSLAKSLNPSIVTLGEYEVNLNDVGFLQRFKNALKYYSTIFESLDPSLTRDSAERVQVERLILGRRIAGAVGLDDGGTRRECMEDKEHWKELMEGAGFKPVTLSHYAMSQAKILLWNYNYSSSFGLIDSAPGFLSLAWKDNPLLTVSSWH
Links
Other
GRAS
family TFs
Other
Solanum lycopersicum
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400014900
Solanum tuberosum
PGSC0003DMG400014900
N
0.978
TCM_000399
Theobroma cacao
TCM_000399
N
0.738
29634.m002156
Ricinus communis
29634.m002156
N
0.731
cassava18797.valid.m1
Manihot esculenta
cassava18797.valid.m1
N
0.723
PRUPE_ppa003124mg
Prunus persica
PRUPE_ppa003124mg
N
0.720
cassava35611.valid.m1
Manihot esculenta
cassava35611.valid.m1
N
0.719
Gorai.003G015400
Gossypium raimondii
Gorai.003G015400
N
0.717
POPTR_0005s12520
Populus trichocarpa
POPTR_0005s12520
N
0.714
Pm026616
Prunus mume
Pm026616
N
0.714
evm.TU.supercontig_6.108
Carica papaya
evm.TU.supercontig_6.108
N
0.709
Gorai.008G068100
Gossypium raimondii
Gorai.008G068100
N
0.706
Lus10024014.g
Linum usitatissimum
Lus10024014.g
N
0.702