CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_6.17
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_6.17
T202530_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_6.17
GRAS
117
498
ATTLLLETARAIADKNSARVQQLMWMLNELGSPYGDTDQKLASYFLQALFSRMTDSGDRCYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAIMEAFEGETKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVPNKSGATSSGSAAVQKVMKEIGNRMEKFARLMGVPFKFNVIHHAGDLCDLNLSELDIKDDEALAINCVGTLHSITTVGNSRDSVVSSFRRLQPRIITVVEEEADLDVGVDGMEFFKGFQECLRWFRVYLESLEESFPRTSNERLMLERAAGRSIVDLVACQPSHSIERRESATRWSRRLHAGGFSPVAFSDEVCDDVRALLRRYKEGWSMAQCPDAGIFLSWKDQPVVWASAWR
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_000801
Theobroma cacao
TCM_000801
N
0.897
cassava32963.m1
Manihot esculenta
cassava32963.m1
N
0.883
cassava7505.valid.m1
Manihot esculenta
cassava7505.valid.m1
N
0.878
SapurV1A.0461s0030
Salix purpurea
SapurV1A.0461s0030
N
0.878
SHR
Populus trichocarpa
POPTR_0012s06430
N
0.867
SHR
Vitis vinifera
VIT_07s0129g00030
N
0.856
Gorai.003G030400
Gossypium raimondii
Gorai.003G030400
N
0.848
Ciclev10025470m.g
Citrus clementina
Ciclev10025470m.g
N
0.846
29661.m000923
Ricinus communis
29661.m000923
N
0.843
MDP0000165587
Malus domestica
MDP0000165587
N
0.843
PRUPE_ppa004454mg
Prunus persica
PRUPE_ppa004454mg
N
0.840
MDP0000687763
Malus domestica
MDP0000687763
N
0.840
MDP0000822651
Malus domestica
MDP0000822651
N
0.840
MDP0000840369
Malus domestica
MDP0000840369
N
0.840
Pm002381
Prunus mume
Pm002381
N
0.837
Gorai.008G083500
Gossypium raimondii
Gorai.008G083500
N
0.837
Aquca_060_00005
Aquilegia coerulea
Aquca_060_00005
N
0.832
gene05757-v1.0-hybrid
Fragaria vesca
gene05757-v1.0-hybrid
N
0.829
Gorai.007G223500
Gossypium raimondii
Gorai.007G223500
N
0.829
MDP0000171602
Malus domestica
MDP0000171602
N
0.824
Eucgr.I00704
Eucalyptus grandis
Eucgr.I00704
N
0.816
PGSC0003DMG400021444
Solanum tuberosum
PGSC0003DMG400021444
N
0.802
Solyc02g092370.1
Solanum lycopersicum
Solyc02g092370.1
N
0.802
GLYMA11G05110
Glycine max
GLYMA11G05110
N
0.799
orange1.1g035867m.g
Citrus sinensis
orange1.1g035867m.g
N
0.799
GLYMA01G40180
Glycine max
GLYMA01G40180
N
0.794
MTR_5g015490
Medicago truncatula
MTR_5g015490
N
0.791
Cla014238
Citrullus lanatus
Cla014238
N
0.789
chr2.CM0168.260.nc
Lotus japonicus
chr2.CM0168.260.nc
N
0.783
Cucsa.103160
Cucumis sativus
Cucsa.103160
N
0.780
Ca_02226
Cicer arietinum
Ca_02226
N
0.778
GLYMA05G22460
Glycine max
GLYMA05G22460
N
0.759
GLYMA17G17400
Glycine max
GLYMA17G17400
N
0.748
PK04147.1
Cannabis sativa
PK04147.1
N
0.745
MTR_4g097080
Medicago truncatula
MTR_4g097080
N
0.740
Ca_09352
Cicer arietinum
Ca_09352
N
0.715
SHR
Arabidopsis lyrata
scaffold_700314.1
N
0.702