CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J24604
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J24604
T203074_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J24604.1.p
GRAS
3
395
GDAPHTLQRHAAVFADALARKLLSLVPGLLRALLSTANSGEVHLVPAARRHLFDMVPFMKLAYLTTNHAILEAMEGEKFVHVVDLSGPASNPVQWVALFHAHRARRGGPPHLRITAVHDGKEFLANMAGALARDAEALDIPFQFSAVEARLEDLDPDALRQLLRVRSGEALAISVVAQLHRLLVADDAAGRSRLHVPGSSCLTPVHIMARSSPSSFGELLERELNTRLQLSPDSPSVASSLSPQSSPAVAAKLGRFLQAVRALSPKIMVVAEPEANHNAAAFLERAAAAQRHRCAAERARVERLVLGEELRGVVAREGAERKERHERLAQWARRMEAAGMGRVGMSFAGMMEARKLLQSLGLGGSYEVVLDARGQAFLFCWHRRPLYSVSAWR
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Hb01986
Panicum virgatum
Pavir.Hb01986
N
0.925
Pavir.Cb02147
Panicum virgatum
Pavir.Cb02147
N
0.878
Si009933m.g
Setaria italica
Si009933m.g
N
0.844
AC198366.3_FG004
Zea mays
AC198366.3_FG004
N
0.788
MLOC_7637
Hordeum vulgare
MLOC_7637
N
0.710
BGIOSGA034523
Oryza indica
BGIOSGA034523
N
0.707
Traes_5BL_ED508277A
Triticum aestivum
Traes_5BL_ED508277A
N
0.707
OS11G0141500
Oryza sativa
OS11G0141500
N
0.704
OS12G0138100
Oryza sativa
OS12G0138100
N
0.704
OPUNC12G02310
Oryza punctata
OPUNC12G02310
N
0.701