chr3.CM0460.90.nd (Lotus japonicus)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 chr3.CM0460.90.nd T203278_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0460.90.nd GRAS 39 442

Links

Other GRAS family TFs
Other Lotus japonicus TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr1.CM0794.360.nd Lotus japonicus chr1.CM0794.360.nd N 0.953
Ca_11133 Cicer arietinum Ca_11133 N 0.880
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.879
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.874
Ca_27441 Cicer arietinum Ca_27441 N 0.868
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.866
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.862
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.847
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.841
TCM_040833 Theobroma cacao TCM_040833 N 0.839
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.821
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.818
Pm012190 Prunus mume Pm012190 N 0.817
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.816
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.815
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.800
30024.m001746 Ricinus communis 30024.m001746 N 0.800
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.797
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.797
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.792
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.790
GLYMA01G43620 Glycine max GLYMA01G43620 N 0.781
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.781
Cla006433 Citrullus lanatus Cla006433 N 0.773
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.773
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.770
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.766
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.766
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.766
GLYMA11G01850 Glycine max GLYMA11G01850 N 0.764
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.763
30131.m007244 Ricinus communis 30131.m007244 N 0.763
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N 0.762
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.761
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.757
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.756
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.756
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.753
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.753
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.753
SCL3 Arabidopsis thaliana AT1G50420 N 0.751
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.751
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.748
Bo5g078760 Brassica oleracea Bo5g078760 N 0.746
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.746
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.745
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.745
Bra018848 Brassica rapa Bra018848 N 0.742
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.742
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N 0.741
TCM_042392 Theobroma cacao TCM_042392 N 0.740
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.740
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.738
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.738
Bra014251 Brassica rapa Bra014251 N 0.737
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N 0.737
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.734
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.732
Cucsa.308180 Cucumis sativus Cucsa.308180 N 0.730
Bo3g179450 Brassica oleracea Bo3g179450 N 0.729
Bo6g022200 Brassica oleracea Bo6g022200 N 0.726
PK02707.1 Cannabis sativa PK02707.1 N 0.726
mgf022906m Mimulus guttatus mgf022906m N 0.721
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.719
Cla020893 Citrullus lanatus Cla020893 N 0.718
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N 0.715
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N 0.710
Pm016466 Prunus mume Pm016466 N 0.710
Pm029840 Prunus mume Pm029840 N 0.710