CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMAG_10906
(
Allomyces macrogynus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
AMAG_10906
T203610_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
UM04928
M02178_2.00
Ustilago maydis
NNNHMATHHN
NDDATKDNNN
PBM
Weirauch et al.(2014)
pTH5932
0.654
0.439
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMAG_10906T0
Homeodomain
156
213
RKKRNMYTPQQRDVLVHYFETVTDHPTKDQRKHLIKLVGTDDQTVRVWFQNYRAKVQR
Links
Other
Homeodomain
family TFs
Other
Allomyces macrogynus
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMAG_11503
Allomyces macrogynus
AMAG_11503
I
0.867
sr15806
Sporisorium reilianum
sr15806
I
0.654
UHOR_07039
Ustilago hordei
UHOR_07039
I
0.654
UM04928
Ustilago maydis
UM04928
D
0.654
PFL1_02807
Pseudozyma flocculosa
PFL1_02807
I
0.653
PHSY_003535
Pseudozyma hubeiensis
PHSY_003535
I
0.638
PSEUBRA_SCAF12g01810
Pseudozyma brasiliensis
PSEUBRA_SCAF12g01810
I
0.638
ENSOCUG00000029369
Oryctolagus cuniculus
ENSOCUG00000029369
I
0.615
LotgiG100635
Lottia gigantea
LotgiG100635
I
0.613