CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra002576
(
Brassica rapa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Bra002576
T205035_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra002576.1-P
Homeodomain
11
59
SSPRWNPTKEQITLLENLYKQGIRTPRADQIQQITGRLRAHGHIEVGCV
Links
Other
Homeodomain
family TFs
Other
Brassica rapa
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra020321
Brassica rapa
Bra020321
N
0.793
Cucsa.213810
Cucumis sativus
Cucsa.213810
N
0.753
OLONG_015615
Oryza longistaminata
OLONG_015615
N
0.723
GRMZM2G419252
Zea mays
GRMZM2G419252
N
0.719
OB05G33420
Oryza brachyantha
OB05G33420
N
0.707
OMERI03G30000
Oryza meridionalis
OMERI03G30000
N
0.707
MDP0000854437
Malus domestica
MDP0000854437
N
0.701
MDP0000874562
Malus domestica
MDP0000874562
N
0.701
Bra034855
Brassica rapa
Bra034855
N
0.685
OBART08G07280
Oryza barthii
OBART08G07280
N
0.678
ONIVA03G16810
Oryza nivara
ONIVA03G16810
N
0.678
MDP0000250248
Malus domestica
MDP0000250248
N
0.673
Traes_1AL_489411063
Triticum aestivum
Traes_1AL_489411063
N
0.670
Ca_12504
Cicer arietinum
Ca_12504
N
0.665
TRIUR3_03990
Triticum urartu
TRIUR3_03990
N
0.655
PK01458.1
Cannabis sativa
PK01458.1
N
0.654
30202.m000250
Ricinus communis
30202.m000250
I
0.622
EMIHUDRAFT_459477
Emiliania huxleyi
EMIHUDRAFT_459477
N
0.621
gene31986-v1.0-hybrid
Fragaria vesca
gene31986-v1.0-hybrid
N
0.616