CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG26065
(
Caenorhabditis briggsae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CBG26065
T205604_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pbx1
M09213_2.00
Mus musculus
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PBX1_MOUSE.H11MO.0.A
0.613
0.319
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG26065
Homeodomain
92
138
KRTRRSHCEVATQILQAYFETSQHPSGLQMAQFAEATGLNNKQVKAW
Links
Other
Homeodomain
family TFs
Other
Caenorhabditis briggsae
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29794.m003447
Ricinus communis
29794.m003447
I
Aquca_013_00366
Aquilegia coerulea
Aquca_013_00366
I
PC-MYB1
Arabidopsis thaliana
AT4G32730
D
Bo1g010040
Brassica oleracea
Bo1g010040
I
Bo7g115810
Brassica oleracea
Bo7g115810
I
Bostr.7867s1124
Boechera stricta
Bostr.7867s1124
I
Bra011376
Brassica rapa
Bra011376
I
Ca_01884
Cicer arietinum
Ca_01884
I
Ca_14925
Cicer arietinum
Ca_14925
I
Ciclev10007316m.g
Citrus clementina
Ciclev10007316m.g
I
Cla022565
Citrullus lanatus
Cla022565
I
Cla023357
Citrullus lanatus
Cla023357
I
Cucsa.161430
Cucumis sativus
Cucsa.161430
I
Cucsa.311420
Cucumis sativus
Cucsa.311420
I
Eucgr.C02893
Eucalyptus grandis
Eucgr.C02893
I
evm.TU.supercontig_78.76
Carica papaya
evm.TU.supercontig_78.76
I
PC-MYB1
Arabidopsis lyrata
fgenesh2_kg.7__866__AT4G32730.2
I
gene08793-v1.0-hybrid
Fragaria vesca
gene08793-v1.0-hybrid
I
GLYMA04G08550
Glycine max
GLYMA04G08550
I
GLYMA06G08660
Glycine max
GLYMA06G08660
I
GLYMA14G21523
Glycine max
GLYMA14G21523
I
GLYMA17G26240
Glycine max
GLYMA17G26240
I
Gorai.009G051000
Gossypium raimondii
Gorai.009G051000
I
Gorai.010G110000
Gossypium raimondii
Gorai.010G110000
I
LjT22I05.60.nd
Lotus japonicus
LjT22I05.60.nd
I
Lus10022136.g
Linum usitatissimum
Lus10022136.g
I
MDP0000179225
Malus domestica
MDP0000179225
I
MDP0000295807
Malus domestica
MDP0000295807
I
mgf006384m
Mimulus guttatus
mgf006384m
I
mgf008601m
Mimulus guttatus
mgf008601m
I
MTR_1g026870
Medicago truncatula
MTR_1g026870
I
MTR_3g110028
Medicago truncatula
MTR_3g110028
I
PK12011.1
Cannabis sativa
PK12011.1
D
Pm005124
Prunus mume
Pm005124
I
POPTR_0006s25840
Populus trichocarpa
POPTR_0006s25840
I
POPTR_0018s00710
Populus trichocarpa
POPTR_0018s00710
I
PRUPE_ppa000676mg
Prunus persica
PRUPE_ppa000676mg
I
Q948S5_TOBAC
Nicotiana tabacum
Q948S5_TOBAC
D
SapurV1A.0283s0180
Salix purpurea
SapurV1A.0283s0180
I
SapurV1A.0446s0220
Salix purpurea
SapurV1A.0446s0220
I
Solyc08g068320.2
Solanum lycopersicum
Solyc08g068320.2
I
TCM_047091
Theobroma cacao
TCM_047091
I
VIT_04s0008g03780
Vitis vinifera
VIT_04s0008g03780
I
VIT_11s0016g03750
Vitis vinifera
VIT_11s0016g03750
I