CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLACG00000016442
(
Latimeria chalumnae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSLACG00000016442
T210902_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pbx1
M09213_2.00
Mus musculus
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PBX1_MOUSE.H11MO.0.A
0.816
0.913
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLACP00000018673
Homeodomain
238
286
RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVTS
ENSLACP00000018674
Homeodomain
170
218
RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVTS
Links
Other
Homeodomain
family TFs
Other
Latimeria chalumnae
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PBX1
Oryzias latipes
ENSORLG00000016702
I
0.849
ENSLOCG00000006841
Lepisosteus oculatus
ENSLOCG00000006841
I
0.833
CABZ01017151.1
Danio rerio
ENSDARG00000104156
I
0.816
PBX1
Homo sapiens
ENSG00000185630
D
0.816
ENSMEUG00000006330
Macropus eugenii
ENSMEUG00000006330
I
0.816
Pbx1
Mus musculus
ENSMUSG00000052534
D
0.816
ENSACAG00000003721
Anolis carolinensis
ENSACAG00000003721
I
0.814
ENSGMOG00000006428
Gadus morhua
ENSGMOG00000006428
I
0.814
ENSSTOG00000013679
Ictidomys tridecemlineatus
ENSSTOG00000013679
I
0.814
PBX3
Tupaia belangeri
ENSTBEG00000016855
I
0.814
Ogr15448
Ophisaurus gracilis
Ogr15448
I
0.814
A_00975
Schistosoma haematobium
A_00975
I
0.811
D915_05491
Fasciola hepatica
D915_05491
I
0.811
ENSMEUG00000002971
Macropus eugenii
ENSMEUG00000002971
I
0.809
Brh_R010078
Buceros rhinoceros
Brh_R010078
I
0.809
PBX4
Oryctolagus cuniculus
ENSOCUG00000029208
I
0.808
SVUK_0000462001
Strongylus vulgaris
SVUK_0000462001
I
0.802
MESCA000707
Megaselia scalaris
MESCA000707
I
0.750
MDOA002143
Musca domestica
MDOA002143
I
0.750
PPAI000859
Phlebotomus papatasi
PPAI000859
I
0.750
TELCIR_02026
Teladorsagia circumcincta
TELCIR_02026
I
0.739
ANCDUO_01775
Ancylostoma duodenale
ANCDUO_01775
I
0.727
LDEC006593
Leptinotarsa decemlineata
LDEC006593
I
0.723
ACOC_0000393801
Angiostrongylus costaricensis
ACOC_0000393801
I
0.682
HmN_000400100
Hymenolepis microstoma
HmN_000400100
I
0.680
AEPI008243
Anopheles epiroticus
AEPI008243
I
0.678
PXEA_0001880101
Protopolystoma xenopodis
PXEA_0001880101
I
0.674
PBX1
Echinops telfairi
ENSETEG00000019309
I
0.663
ANCCEY_11361
Ancylostoma ceylanicum
ANCCEY_11361
I
0.662
MhA1_Contig138.frz3.gene24
Meloidogyne hapla
MhA1_Contig138.frz3.gene24
I
0.656
SVUK_0001050601
Strongylus vulgaris
SVUK_0001050601
I
0.644
CBG26065
Caenorhabditis briggsae
CBG26065
I
0.613
MYCFIDRAFT_76128
Pseudocercospora fijiensis
MYCFIDRAFT_76128
I
0.609
fgenesh1_pg.C_scaffold_1001003
Mycosphaerella fijiensis
fgenesh1_pg.C_scaffold_1001003
I
0.609
Myotis_brandtii_MIMI_L668_10004071
Myotis brandtii
Myotis_brandtii_MIMI_L668_10004071
I
0.603
Myotis_brandtii_MIMI_R196_10004074
Myotis brandtii
Myotis_brandtii_MIMI_R196_10004074
I
0.603
UCRNP2_7717
Neofusicoccum parvum
UCRNP2_7717
I
0.599