CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPSIG00000014400
(
Pelodiscus sinensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSPSIG00000014400
T214946_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB
VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.867
0.982
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN
NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.867
0.982
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB
VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.867
0.982
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB
VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.867
0.982
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.867
0.982
CDX2
M10723_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.867
0.982
CDX2
M10724_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.867
0.982
CDX2
M10725_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.867
0.982
CDX2
M10726_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.867
0.982
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.867
0.982
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN
NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.862
0.947
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.862
0.947
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC
GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.862
0.947
CDX1
M10761_2.00
Gallus gallus
BDBWAAK
MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.855
0.982
CDX1
M10762_2.00
Gallus gallus
WWWWMYR
YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.855
0.982
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN
NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.855
0.965
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB
VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.855
0.965
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN
NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.855
0.965
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.855
0.965
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.855
0.965
CDX1
M10670_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.855
0.965
CDX1
M10671_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.855
0.965
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB
VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.855
0.965
cad
M03780_2.00
Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN
SELEX
Nitta et al.(2015)
cad_1
0.851
0.860
cad
M03781_2.00
Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_2
0.851
0.860
cad
M03782_2.00
Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_3
0.851
0.860
cad
M03783_2.00
Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN
SELEX
Nitta et al.(2015)
cad_4
0.851
0.860
cad
M06223_2.00
Drosophila melanogaster
HTTWATTR
YAATWAAD
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
0.851
0.860
cad
M06224_2.00
Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
0.851
0.860
cad
M06225_2.00
Drosophila melanogaster
NTTWATKR
YMATWAAN
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
0.851
0.860
cad
M08420_2.00
Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH
ChIP-chip
Mathelier et al.(2014)
MA0216.2
0.851
0.860
cad
M09580_2.00
Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
0.851
0.860
cad
M09674_2.00
Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD
Misc
Kulakovskiy et al.(2009)
cad
0.851
0.860
cad
M10783_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$CAD_Q6
0.851
0.860
Q70LF3_ARTSF
M02211_2.00
Artemia franciscana
BTAATTAB
VTAATTAV
PBM
Weirauch et al.(2014)
pTH5553
0.834
0.877
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH
DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.819
0.877
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH
DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.819
0.860
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN
NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.819
0.860
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN
NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.819
0.860
pal-1
M02183_2.00
Caenorhabditis elegans
GYAATWAA
TTWATTRC
PBM
Weirauch et al.(2014)
pTH6016
0.650
0.702
Q9GP48_9TURB
M02217_2.00
Discocelis tigrina
DTAATTAB
VTAATTAH
PBM
Weirauch et al.(2014)
pTH6515
0.641
0.719
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA
TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.613
0.579
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPSIP00000016159
Homeodomain
150
206
DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLTERQVKIWFQNRRAKERK
Links
Other
Homeodomain
family TFs
Other
Pelodiscus sinensis
TFs
346 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRC
Arabidopsis thaliana
AT1G69180
D
BGIOSGA014650
Oryza indica
BGIOSGA014650
I
Bo6g108630
Brassica oleracea
Bo6g108630
I
Bra004364
Brassica rapa
Bra004364
I
BRADI3G30410
Brachypodium distachyon
BRADI3G30410
I
BRADI3G50050
Brachypodium distachyon
BRADI3G50050
I
BRADI5G16910
Brachypodium distachyon
BRADI5G16910
I
F775_25525
Aegilops tauschii
F775_25525
I
F775_27799
Aegilops tauschii
F775_27799
I
CRC
Arabidopsis lyrata
fgenesh2_kg.2__1172__AT1G69180.1
I
GLYMA01G03580
Glycine max
GLYMA01G03580
I
GLYMA01G33370
Glycine max
GLYMA01G33370
I
GLYMA03G03500
Glycine max
GLYMA03G03500
I
GLYMA04G10125
Glycine max
GLYMA04G10125
I
GLYMA05G04260
Glycine max
GLYMA05G04260
I
GLYMA12G31670
Glycine max
GLYMA12G31670
I
GLYMA17G14710
Glycine max
GLYMA17G14710
I
GRMZM2G005353
Zea mays
GRMZM2G005353
I
GRMZM2G054795
Zea mays
GRMZM2G054795
I
GRMZM2G074543
Zea mays
GRMZM2G074543
I
GRMZM2G167824
Zea mays
GRMZM2G167824
I
GRMZM2G529859
Zea mays
GRMZM2G529859
I
GSMUA_Achr11G03800_001
Musa acuminata
GSMUA_Achr11G03800_001
I
GSMUA_Achr11G17520_001
Musa acuminata
GSMUA_Achr11G17520_001
I
GSMUA_Achr7G07130_001
Musa acuminata
GSMUA_Achr7G07130_001
I
GSMUA_Achr8G11580_001
Musa acuminata
GSMUA_Achr8G11580_001
I
LPERR02G20990
Leersia perrieri
LPERR02G20990
I
LPERR04G16190
Leersia perrieri
LPERR04G16190
I
LPERR10G11580
Leersia perrieri
LPERR10G11580
I
MLOC_60897
Hordeum vulgare
MLOC_60897
I
MLOC_70653
Hordeum vulgare
MLOC_70653
I
MTR_4g025900
Medicago truncatula
MTR_4g025900
I
MTR_4g101660
Medicago truncatula
MTR_4g101660
I
OB02G33040
Oryza brachyantha
OB02G33040
I
OB04G27010
Oryza brachyantha
OB04G27010
I
OBART02G25670
Oryza barthii
OBART02G25670
I
OBART04G20010
Oryza barthii
OBART04G20010
I
OBART10G15260
Oryza barthii
OBART10G15260
I
OGLUM02G26190
Oryza glumaepatula
OGLUM02G26190
I
OGLUM04G19890
Oryza glumaepatula
OGLUM04G19890
I
OGLUM10G15140
Oryza glumaepatula
OGLUM10G15140
I
OLONG_018621
Oryza longistaminata
OLONG_018621
I
OMERI02G25190
Oryza meridionalis
OMERI02G25190
I
OMERI04G17000
Oryza meridionalis
OMERI04G17000
I
OMERI10G11950
Oryza meridionalis
OMERI10G11950
I
ONIVA02G28110
Oryza nivara
ONIVA02G28110
I
ONIVA04G18220
Oryza nivara
ONIVA04G18220
I
ONIVA04G21490
Oryza nivara
ONIVA04G21490
I
OPUNC02G23520
Oryza punctata
OPUNC02G23520
I
OPUNC10G13730
Oryza punctata
OPUNC10G13730
I
ORGLA02G0220100
Oryza glaberrima
ORGLA02G0220100
I
ORGLA04G0171000
Oryza glaberrima
ORGLA04G0171000
I
ORUFI02G27080
Oryza rufipogon
ORUFI02G27080
I
ORUFI04G21570
Oryza rufipogon
ORUFI04G21570
I
ORUFI10G16240
Oryza rufipogon
ORUFI10G16240
I
YAB4
Oryza sativa
OS02G0643200
I
YAB5
Oryza sativa
OS04G0536300
I
YAB3
Oryza sativa
OS10G0508300
I
OSTLU_31946
Ostreococcus lucimarinus
OSTLU_31946
I
PGSC0003DMG400025969
Solanum tuberosum
PGSC0003DMG400025969
I
POPTR_0001s00240
Populus trichocarpa
POPTR_0001s00240
I
POPTR_0002s14600
Populus trichocarpa
POPTR_0002s14600
I
POPTR_0003s11230
Populus trichocarpa
POPTR_0003s11230
I
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
POPTR_0014s06210
Populus trichocarpa
POPTR_0014s06210
I
PRUPE_ppa010905mg
Prunus persica
PRUPE_ppa010905mg
I
PRUPE_ppa011209mg
Prunus persica
PRUPE_ppa011209mg
I
Sb01g017560
Sorghum bicolor
Sb01g017560
I
Sb04g033590
Sorghum bicolor
Sb04g033590
I
Sb06g023770
Sorghum bicolor
Sb06g023770
I
Si010859m.g
Setaria italica
Si010859m.g
I
Si018146m.g
Setaria italica
Si018146m.g
I
Si036788m.g
Setaria italica
Si036788m.g
I
Solyc01g091010.2
Solanum lycopersicum
Solyc01g091010.2
I
TCM_005549
Theobroma cacao
TCM_005549
I
TCM_016030
Theobroma cacao
TCM_016030
I
Traes_1DL_C5AF9D06A
Triticum aestivum
Traes_1DL_C5AF9D06A
I
Traes_2AL_71DE02042
Triticum aestivum
Traes_2AL_71DE02042
I
Traes_2BL_8BEA9CE1B
Triticum aestivum
Traes_2BL_8BEA9CE1B
I
Traes_3AL_730255B9F
Triticum aestivum
Traes_3AL_730255B9F
I
Traes_6AL_2983D4EB6
Triticum aestivum
Traes_6AL_2983D4EB6
I
Traes_6BL_3F8DB6043
Triticum aestivum
Traes_6BL_3F8DB6043
I
Traes_6DL_59DB06B9F
Triticum aestivum
Traes_6DL_59DB06B9F
I
TRIUR3_27479
Triticum urartu
TRIUR3_27479
I
TRIUR3_29073
Triticum urartu
TRIUR3_29073
I
VIT_02s0154g00070
Vitis vinifera
VIT_02s0154g00070
I
VIT_15s0048g00550
Vitis vinifera
VIT_15s0048g00550
I
Ca_25981
Cicer arietinum
Ca_25981
I
Cla005767
Citrullus lanatus
Cla005767
I
Cla011745
Citrullus lanatus
Cla011745
I
Pm017846
Prunus mume
Pm017846
I
Pm023555
Prunus mume
Pm023555
I
28200.m000191
Ricinus communis
28200.m000191
I
30174.m008839
Ricinus communis
30174.m008839
I
cassava13963.valid.m1
Manihot esculenta
cassava13963.valid.m1
I
cassava17722.valid.m1
Manihot esculenta
cassava17722.valid.m1
I
cassava30083.valid.m1
Manihot esculenta
cassava30083.valid.m1
I
cassava43469.valid.m1
Manihot esculenta
cassava43469.valid.m1
I
Cucsa.302100
Cucumis sativus
Cucsa.302100
I
Cucsa.320600
Cucumis sativus
Cucsa.320600
I
mgf003166m
Mimulus guttatus
mgf003166m
I
mgf011463m
Mimulus guttatus
mgf011463m
I
mgf015806m
Mimulus guttatus
mgf015806m
I
Bostr.10273s0455
Boechera stricta
Bostr.10273s0455
I
Cagra.0537s0004
Capsella grandiflora
Cagra.0537s0004
I
Carubv10021641m.g
Capsella rubella
Carubv10021641m.g
I
Ciclev10021834m.g
Citrus clementina
Ciclev10021834m.g
I
Ciclev10022170m.g
Citrus clementina
Ciclev10022170m.g
I
Ciclev10033714m.g
Citrus clementina
Ciclev10033714m.g
I
Eucgr.E01474
Eucalyptus grandis
Eucgr.E01474
I
Eucgr.J00587
Eucalyptus grandis
Eucgr.J00587
I
evm.TU.supercontig_145.3
Carica papaya
evm.TU.supercontig_145.3
I
evm.TU.supercontig_29.121
Carica papaya
evm.TU.supercontig_29.121
I
gene32251-v1.0-hybrid
Fragaria vesca
gene32251-v1.0-hybrid
I
Gorai.001G174800
Gossypium raimondii
Gorai.001G174800
I
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
Gorai.008G236500
Gossypium raimondii
Gorai.008G236500
I
Lus10010361.g
Linum usitatissimum
Lus10010361.g
I
Lus10036496.g
Linum usitatissimum
Lus10036496.g
I
MDP0000124879
Malus domestica
MDP0000124879
I
MDP0000171878
Malus domestica
MDP0000171878
I
MDP0000192940
Malus domestica
MDP0000192940
I
MDP0000291729
Malus domestica
MDP0000291729
I
MDP0000298333
Malus domestica
MDP0000298333
I
orange1.1g027215m.g
Citrus sinensis
orange1.1g027215m.g
I
orange1.1g028144m.g
Citrus sinensis
orange1.1g028144m.g
I
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
orange1.1g046045m.g
Citrus sinensis
orange1.1g046045m.g
I
Pavir.Aa01223
Panicum virgatum
Pavir.Aa01223
I
Pavir.Ab02534
Panicum virgatum
Pavir.Ab02534
I
Pavir.Ga00891
Panicum virgatum
Pavir.Ga00891
I
Pavir.Gb00743
Panicum virgatum
Pavir.Gb00743
I
Pavir.Ib03707
Panicum virgatum
Pavir.Ib03707
I
SapurV1A.0033s0530
Salix purpurea
SapurV1A.0033s0530
I
SapurV1A.0217s0100
Salix purpurea
SapurV1A.0217s0100
I
SapurV1A.0248s0170
Salix purpurea
SapurV1A.0248s0170
I
SapurV1A.0634s0130
Salix purpurea
SapurV1A.0634s0130
I
SapurV1A.1275s0050
Salix purpurea
SapurV1A.1275s0050
I
SapurV1A.2672s0010
Salix purpurea
SapurV1A.2672s0010
I
Thhalv10019126m.g
Eutrema salsugineum
Thhalv10019126m.g
I
23225_YPR052C
Saccharomyces paradoxus
23225_YPR052C
I
LjSGA_107961.1
Lotus japonicus
LjSGA_107961.1
I
CBN04053
Caenorhabditis brenneri
CBN04053
N
GRMZM2G144398
Zea mays
GRMZM2G144398
N
H101_08199
Trichophyton interdigitale
H101_08199
N
PK25712.1
Cannabis sativa
PK25712.1
N
ASIS014204
Anopheles sinensis
ASIS014204
N
BGLB013489
Biomphalaria glabrata
BGLB013489
N
ACAC_0000798501
Angiostrongylus cantonensis
ACAC_0000798501
N
ACOC_0001190001
Angiostrongylus costaricensis
ACOC_0001190001
N
ALUE_0001190701
Ascaris lumbricoides
ALUE_0001190701
N
OESDEN_18796
Oesophagostomum dentatum
OESDEN_18796
N
PEQ_0000212901
Parascaris equorum
PEQ_0000212901
N
RSKR_0000394100
Rhabditophanes kr3021
RSKR_0000394100
N
TCNE_0000520101
Toxocara canis
TCNE_0000520101
N