ENSPSIG00000014400 (Pelodiscus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPSIG00000014400 T214946_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB

VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.867 0.982
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN

NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.867 0.982
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB

VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.867 0.982
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB

VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.867 0.982
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB

VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.867 0.982
CDX2
M10723_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.867 0.982
CDX2
M10724_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.867 0.982
CDX2
M10725_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.867 0.982
CDX2
M10726_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.867 0.982
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN

NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.867 0.982
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN

NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.862 0.947
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY

RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.862 0.947
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC

GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.862 0.947
CDX1
M10761_2.00
Gallus gallus
BDBWAAK

MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.855 0.982
CDX1
M10762_2.00
Gallus gallus
WWWWMYR

YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.855 0.982
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN

NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.855 0.965
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB

VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.855 0.965
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN

NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.855 0.965
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.855 0.965
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.855 0.965
CDX1
M10670_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.855 0.965
CDX1
M10671_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.855 0.965
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB

VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.855 0.965
cad
M03780_2.00
Drosophila melanogaster
NKTTTATKRCHB

VDGYMATAAAMN
SELEX
Nitta et al.(2015)
cad_1
0.851 0.860
cad
M03781_2.00
Drosophila melanogaster
NDTTTATKRCHN

NDGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_2
0.851 0.860
cad
M03782_2.00
Drosophila melanogaster
NDTTTATKRCNB

VNGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_3
0.851 0.860
cad
M03783_2.00
Drosophila melanogaster
NNTTTAYGRYNN

NNRYCRTAAANN
SELEX
Nitta et al.(2015)
cad_4
0.851 0.860
cad
M06223_2.00
Drosophila melanogaster
HTTWATTR

YAATWAAD
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
0.851 0.860
cad
M06224_2.00
Drosophila melanogaster
RBYVDAAMV

BKTTHBRVY
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
0.851 0.860
cad
M06225_2.00
Drosophila melanogaster
NTTWATKR

YMATWAAN
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
0.851 0.860
cad
M08420_2.00
Drosophila melanogaster
DTTTTATKRYY

RRYMATAAAAH
ChIP-chip
Mathelier et al.(2014)
MA0216.2
0.851 0.860
cad
M09580_2.00
Drosophila melanogaster
DTTTAYGRYN

NRYCRTAAAH
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
0.851 0.860
cad
M09674_2.00
Drosophila melanogaster
HTTTATKRBY

RVYMATAAAD
Misc
Kulakovskiy et al.(2009)
cad
0.851 0.860
cad
M10783_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$CAD_Q6
0.851 0.860
Q70LF3_ARTSF
M02211_2.00
Artemia franciscana
BTAATTAB

VTAATTAV
PBM
Weirauch et al.(2014)
pTH5553
0.834 0.877
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH

DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.819 0.877
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH

DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.819 0.860
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN

NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.819 0.860
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN

NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.819 0.860
pal-1
M02183_2.00
Caenorhabditis elegans
GYAATWAA

TTWATTRC
PBM
Weirauch et al.(2014)
pTH6016
0.650 0.702
Q9GP48_9TURB
M02217_2.00
Discocelis tigrina
DTAATTAB

VTAATTAH
PBM
Weirauch et al.(2014)
pTH6515
0.641 0.719
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA

TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.613 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000016159 Homeodomain 150 206

Links

Other Homeodomain family TFs
Other Pelodiscus sinensis TFs

346 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CRC Arabidopsis thaliana AT1G69180 D
BGIOSGA014650 Oryza indica BGIOSGA014650 I
Bo6g108630 Brassica oleracea Bo6g108630 I
Bra004364 Brassica rapa Bra004364 I
BRADI3G30410 Brachypodium distachyon BRADI3G30410 I
BRADI3G50050 Brachypodium distachyon BRADI3G50050 I
BRADI5G16910 Brachypodium distachyon BRADI5G16910 I
F775_25525 Aegilops tauschii F775_25525 I
F775_27799 Aegilops tauschii F775_27799 I
CRC Arabidopsis lyrata fgenesh2_kg.2__1172__AT1G69180.1 I
GLYMA01G03580 Glycine max GLYMA01G03580 I
GLYMA01G33370 Glycine max GLYMA01G33370 I
GLYMA03G03500 Glycine max GLYMA03G03500 I
GLYMA04G10125 Glycine max GLYMA04G10125 I
GLYMA05G04260 Glycine max GLYMA05G04260 I
GLYMA12G31670 Glycine max GLYMA12G31670 I
GLYMA17G14710 Glycine max GLYMA17G14710 I
GRMZM2G005353 Zea mays GRMZM2G005353 I
GRMZM2G054795 Zea mays GRMZM2G054795 I
GRMZM2G074543 Zea mays GRMZM2G074543 I
GRMZM2G167824 Zea mays GRMZM2G167824 I
GRMZM2G529859 Zea mays GRMZM2G529859 I
GSMUA_Achr11G03800_001 Musa acuminata GSMUA_Achr11G03800_001 I
GSMUA_Achr11G17520_001 Musa acuminata GSMUA_Achr11G17520_001 I
GSMUA_Achr7G07130_001 Musa acuminata GSMUA_Achr7G07130_001 I
GSMUA_Achr8G11580_001 Musa acuminata GSMUA_Achr8G11580_001 I
LPERR02G20990 Leersia perrieri LPERR02G20990 I
LPERR04G16190 Leersia perrieri LPERR04G16190 I
LPERR10G11580 Leersia perrieri LPERR10G11580 I
MLOC_60897 Hordeum vulgare MLOC_60897 I
MLOC_70653 Hordeum vulgare MLOC_70653 I
MTR_4g025900 Medicago truncatula MTR_4g025900 I
MTR_4g101660 Medicago truncatula MTR_4g101660 I
OB02G33040 Oryza brachyantha OB02G33040 I
OB04G27010 Oryza brachyantha OB04G27010 I
OBART02G25670 Oryza barthii OBART02G25670 I
OBART04G20010 Oryza barthii OBART04G20010 I
OBART10G15260 Oryza barthii OBART10G15260 I
OGLUM02G26190 Oryza glumaepatula OGLUM02G26190 I
OGLUM04G19890 Oryza glumaepatula OGLUM04G19890 I
OGLUM10G15140 Oryza glumaepatula OGLUM10G15140 I
OLONG_018621 Oryza longistaminata OLONG_018621 I
OMERI02G25190 Oryza meridionalis OMERI02G25190 I
OMERI04G17000 Oryza meridionalis OMERI04G17000 I
OMERI10G11950 Oryza meridionalis OMERI10G11950 I
ONIVA02G28110 Oryza nivara ONIVA02G28110 I
ONIVA04G18220 Oryza nivara ONIVA04G18220 I
ONIVA04G21490 Oryza nivara ONIVA04G21490 I
OPUNC02G23520 Oryza punctata OPUNC02G23520 I
OPUNC10G13730 Oryza punctata OPUNC10G13730 I
ORGLA02G0220100 Oryza glaberrima ORGLA02G0220100 I
ORGLA04G0171000 Oryza glaberrima ORGLA04G0171000 I
ORUFI02G27080 Oryza rufipogon ORUFI02G27080 I
ORUFI04G21570 Oryza rufipogon ORUFI04G21570 I
ORUFI10G16240 Oryza rufipogon ORUFI10G16240 I
YAB4 Oryza sativa OS02G0643200 I
YAB5 Oryza sativa OS04G0536300 I
YAB3 Oryza sativa OS10G0508300 I
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I
PGSC0003DMG400025969 Solanum tuberosum PGSC0003DMG400025969 I
POPTR_0001s00240 Populus trichocarpa POPTR_0001s00240 I
POPTR_0002s14600 Populus trichocarpa POPTR_0002s14600 I
POPTR_0003s11230 Populus trichocarpa POPTR_0003s11230 I
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I
POPTR_0014s06210 Populus trichocarpa POPTR_0014s06210 I
PRUPE_ppa010905mg Prunus persica PRUPE_ppa010905mg I
PRUPE_ppa011209mg Prunus persica PRUPE_ppa011209mg I
Sb01g017560 Sorghum bicolor Sb01g017560 I
Sb04g033590 Sorghum bicolor Sb04g033590 I
Sb06g023770 Sorghum bicolor Sb06g023770 I
Si010859m.g Setaria italica Si010859m.g I
Si018146m.g Setaria italica Si018146m.g I
Si036788m.g Setaria italica Si036788m.g I
Solyc01g091010.2 Solanum lycopersicum Solyc01g091010.2 I
TCM_005549 Theobroma cacao TCM_005549 I
TCM_016030 Theobroma cacao TCM_016030 I
Traes_1DL_C5AF9D06A Triticum aestivum Traes_1DL_C5AF9D06A I
Traes_2AL_71DE02042 Triticum aestivum Traes_2AL_71DE02042 I
Traes_2BL_8BEA9CE1B Triticum aestivum Traes_2BL_8BEA9CE1B I
Traes_3AL_730255B9F Triticum aestivum Traes_3AL_730255B9F I
Traes_6AL_2983D4EB6 Triticum aestivum Traes_6AL_2983D4EB6 I
Traes_6BL_3F8DB6043 Triticum aestivum Traes_6BL_3F8DB6043 I
Traes_6DL_59DB06B9F Triticum aestivum Traes_6DL_59DB06B9F I
TRIUR3_27479 Triticum urartu TRIUR3_27479 I
TRIUR3_29073 Triticum urartu TRIUR3_29073 I
VIT_02s0154g00070 Vitis vinifera VIT_02s0154g00070 I
VIT_15s0048g00550 Vitis vinifera VIT_15s0048g00550 I
Ca_25981 Cicer arietinum Ca_25981 I
Cla005767 Citrullus lanatus Cla005767 I
Cla011745 Citrullus lanatus Cla011745 I
Pm017846 Prunus mume Pm017846 I
Pm023555 Prunus mume Pm023555 I
28200.m000191 Ricinus communis 28200.m000191 I
30174.m008839 Ricinus communis 30174.m008839 I
cassava13963.valid.m1 Manihot esculenta cassava13963.valid.m1 I
cassava17722.valid.m1 Manihot esculenta cassava17722.valid.m1 I
cassava30083.valid.m1 Manihot esculenta cassava30083.valid.m1 I
cassava43469.valid.m1 Manihot esculenta cassava43469.valid.m1 I
Cucsa.302100 Cucumis sativus Cucsa.302100 I
Cucsa.320600 Cucumis sativus Cucsa.320600 I
mgf003166m Mimulus guttatus mgf003166m I
mgf011463m Mimulus guttatus mgf011463m I
mgf015806m Mimulus guttatus mgf015806m I
Bostr.10273s0455 Boechera stricta Bostr.10273s0455 I
Cagra.0537s0004 Capsella grandiflora Cagra.0537s0004 I
Carubv10021641m.g Capsella rubella Carubv10021641m.g I
Ciclev10021834m.g Citrus clementina Ciclev10021834m.g I
Ciclev10022170m.g Citrus clementina Ciclev10022170m.g I
Ciclev10033714m.g Citrus clementina Ciclev10033714m.g I
Eucgr.E01474 Eucalyptus grandis Eucgr.E01474 I
Eucgr.J00587 Eucalyptus grandis Eucgr.J00587 I
evm.TU.supercontig_145.3 Carica papaya evm.TU.supercontig_145.3 I
evm.TU.supercontig_29.121 Carica papaya evm.TU.supercontig_29.121 I
gene32251-v1.0-hybrid Fragaria vesca gene32251-v1.0-hybrid I
Gorai.001G174800 Gossypium raimondii Gorai.001G174800 I
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I
Gorai.008G236500 Gossypium raimondii Gorai.008G236500 I
Lus10010361.g Linum usitatissimum Lus10010361.g I
Lus10036496.g Linum usitatissimum Lus10036496.g I
MDP0000124879 Malus domestica MDP0000124879 I
MDP0000171878 Malus domestica MDP0000171878 I
MDP0000192940 Malus domestica MDP0000192940 I
MDP0000291729 Malus domestica MDP0000291729 I
MDP0000298333 Malus domestica MDP0000298333 I
orange1.1g027215m.g Citrus sinensis orange1.1g027215m.g I
orange1.1g028144m.g Citrus sinensis orange1.1g028144m.g I
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I
orange1.1g046045m.g Citrus sinensis orange1.1g046045m.g I
Pavir.Aa01223 Panicum virgatum Pavir.Aa01223 I
Pavir.Ab02534 Panicum virgatum Pavir.Ab02534 I
Pavir.Ga00891 Panicum virgatum Pavir.Ga00891 I
Pavir.Gb00743 Panicum virgatum Pavir.Gb00743 I
Pavir.Ib03707 Panicum virgatum Pavir.Ib03707 I
SapurV1A.0033s0530 Salix purpurea SapurV1A.0033s0530 I
SapurV1A.0217s0100 Salix purpurea SapurV1A.0217s0100 I
SapurV1A.0248s0170 Salix purpurea SapurV1A.0248s0170 I
SapurV1A.0634s0130 Salix purpurea SapurV1A.0634s0130 I
SapurV1A.1275s0050 Salix purpurea SapurV1A.1275s0050 I
SapurV1A.2672s0010 Salix purpurea SapurV1A.2672s0010 I
Thhalv10019126m.g Eutrema salsugineum Thhalv10019126m.g I
23225_YPR052C Saccharomyces paradoxus 23225_YPR052C I
LjSGA_107961.1 Lotus japonicus LjSGA_107961.1 I
CBN04053 Caenorhabditis brenneri CBN04053 N
GRMZM2G144398 Zea mays GRMZM2G144398 N
H101_08199 Trichophyton interdigitale H101_08199 N
PK25712.1 Cannabis sativa PK25712.1 N
ASIS014204 Anopheles sinensis ASIS014204 N
BGLB013489 Biomphalaria glabrata BGLB013489 N
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N
RSKR_0000394100 Rhabditophanes kr3021 RSKR_0000394100 N
TCNE_0000520101 Toxocara canis TCNE_0000520101 N