ENSSHAG00000017862 (Sarcophilus harrisii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSSHAG00000017862 T215751_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.867 1.000
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.867 1.000
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.867 1.000
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.867 1.000
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.867 1.000
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.867 1.000
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.867 1.000
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.867 1.000
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.867 1.000
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.867 1.000
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.862 0.965
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.862 0.965
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.862 0.965
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.855 0.965
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.855 0.965
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.855 0.947
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.855 0.947
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.855 0.947
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.855 0.947
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.855 0.947
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.855 0.947
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.855 0.947
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.855 0.947
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.851 0.877
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.851 0.877
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.851 0.877
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.851 0.877
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.851 0.877
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.851 0.877
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.851 0.877
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.851 0.877
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.851 0.877
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.851 0.877
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.851 0.877
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.834 0.895
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.819 0.895
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.819 0.877
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.819 0.877
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.819 0.877
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.650 0.684
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.641 0.702
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.613 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSHAP00000021065 Homeodomain 178 234

Links

Other Homeodomain family TFs
Other Sarcophilus harrisii TFs

346 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00539 Aegilops tauschii F775_00539 N
Aquca_010_00033 Aquilegia coerulea Aquca_010_00033 N
fgenesh2_kg.6__1024__AT5G10570.1 Arabidopsis lyrata fgenesh2_kg.6__1024__AT5G10570.1 N
bHLH093 Arabidopsis lyrata fgenesh2_kg.8__2611__AT5G65640.1 N
BHLH61 Arabidopsis thaliana AT5G10570 N
BHLH93 Arabidopsis thaliana AT5G65640 N
Bostr.0568s0223 Boechera stricta Bostr.0568s0223 N
Bostr.13175s0042 Boechera stricta Bostr.13175s0042 N
BRADI1G30000 Brachypodium distachyon BRADI1G30000 N
BRADI1G76030 Brachypodium distachyon BRADI1G76030 N
Bo2g168250 Brassica oleracea Bo2g168250 N
Bo3g097890 Brassica oleracea Bo3g097890 N
Bo9g171940 Brassica oleracea Bo9g171940 N
Bra024404 Brassica rapa Bra024404 N
Bra031852 Brassica rapa Bra031852 N
PK12634.1 Cannabis sativa PK12634.1 N
Cagra.0917s0023 Capsella grandiflora Cagra.0917s0023 N
Cagra.1085s0002 Capsella grandiflora Cagra.1085s0002 N
Carubv10001486m.g Capsella rubella Carubv10001486m.g N
Carubv10026606m.g Capsella rubella Carubv10026606m.g N
evm.TU.supercontig_129.19 Carica papaya evm.TU.supercontig_129.19 N
evm.TU.supercontig_177.1 Carica papaya evm.TU.supercontig_177.1 N
Ca_04981 Cicer arietinum Ca_04981 N
Ca_11531 Cicer arietinum Ca_11531 N
Cla014300 Citrullus lanatus Cla014300 N
Cla022518 Citrullus lanatus Cla022518 N
Cla023435 Citrullus lanatus Cla023435 N
Ciclev10001683m.g Citrus clementina Ciclev10001683m.g N
Ciclev10025967m.g Citrus clementina Ciclev10025967m.g N
orange1.1g018897m.g Citrus sinensis orange1.1g018897m.g N
orange1.1g038389m.g Citrus sinensis orange1.1g038389m.g N
Cucsa.103760 Cucumis sativus Cucsa.103760 N
Cucsa.160860 Cucumis sativus Cucsa.160860 N
Cucsa.312190 Cucumis sativus Cucsa.312190 N
Eucgr.F00459 Eucalyptus grandis Eucgr.F00459 N
Eucgr.F02171 Eucalyptus grandis Eucgr.F02171 N
Eucgr.I00608 Eucalyptus grandis Eucgr.I00608 N
Thhalv10004732m.g Eutrema salsugineum Thhalv10004732m.g N
gene05560-v1.0-hybrid Fragaria vesca gene05560-v1.0-hybrid N
gene26895-v1.0-hybrid Fragaria vesca gene26895-v1.0-hybrid N
GLYMA01G02390 Glycine max GLYMA01G02390 N
GLYMA02G38240 Glycine max GLYMA02G38240 N
GLYMA04G09580 Glycine max GLYMA04G09580 N
GLYMA06G09670 Glycine max GLYMA06G09670 N
GLYMA08G37240 Glycine max GLYMA08G37240 N
GLYMA09G33590 Glycine max GLYMA09G33590 N
GLYMA14G36370 Glycine max GLYMA14G36370 N
Gorai.002G137900 Gossypium raimondii Gorai.002G137900 N
Gorai.003G035900 Gossypium raimondii Gorai.003G035900 N
Gorai.007G229900 Gossypium raimondii Gorai.007G229900 N
Gorai.009G226200 Gossypium raimondii Gorai.009G226200 N
Gorai.009G337700 Gossypium raimondii Gorai.009G337700 N
Gorai.010G031800 Gossypium raimondii Gorai.010G031800 N
MLOC_55768 Hordeum vulgare MLOC_55768 N
LPERR03G02580 Leersia perrieri LPERR03G02580 N
LPERR06G23280 Leersia perrieri LPERR06G23280 N
Lus10002160.g Linum usitatissimum Lus10002160.g N
Lus10039631.g Linum usitatissimum Lus10039631.g N
chr2.CM0177.460.nc Lotus japonicus chr2.CM0177.460.nc N
chr2.CM0504.20.nd Lotus japonicus chr2.CM0504.20.nd N
LjSGA_043777.1 Lotus japonicus LjSGA_043777.1 N
MDP0000175282 Malus domestica MDP0000175282 N
MDP0000178782 Malus domestica MDP0000178782 N
MDP0000312274 Malus domestica MDP0000312274 N
MDP0000603926 Malus domestica MDP0000603926 N
MDP0000644807 Malus domestica MDP0000644807 N
cassava1707.valid.m1 Manihot esculenta cassava1707.valid.m1 N
cassava20174.m1 Manihot esculenta cassava20174.m1 N
cassava35909.valid.m1 Manihot esculenta cassava35909.valid.m1 N
cassava42105.valid.m1 Manihot esculenta cassava42105.valid.m1 N
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I
MTR_3g111290 Medicago truncatula MTR_3g111290 N
MTR_5g030770 Medicago truncatula MTR_5g030770 N
mgf001568m Mimulus guttatus mgf001568m N
mgf011848m Mimulus guttatus mgf011848m N
mgf017272m Mimulus guttatus mgf017272m N
GSMUA_Achr1G26300_001 Musa acuminata GSMUA_Achr1G26300_001 N
GSMUA_Achr7G03930_001 Musa acuminata GSMUA_Achr7G03930_001 N
GSMUA_Achr8G34120_001 Musa acuminata GSMUA_Achr8G34120_001 N
GSMUA_AchrUn_randomG16890_001 Musa acuminata GSMUA_AchrUn_randomG16890_001 N
OBART03G02840 Oryza barthii OBART03G02840 N
OBART06G27800 Oryza barthii OBART06G27800 N
OBART06G27860 Oryza barthii OBART06G27860 N
OBART10G17440 Oryza barthii OBART10G17440 N
OB03G12820 Oryza brachyantha OB03G12820 N
ORGLA03G0026100 Oryza glaberrima ORGLA03G0026100 N
ORGLA10G0124500 Oryza glaberrima ORGLA10G0124500 N
OGLUM03G02750 Oryza glumaepatula OGLUM03G02750 N
OGLUM06G29220 Oryza glumaepatula OGLUM06G29220 N
OGLUM10G17470 Oryza glumaepatula OGLUM10G17470 N
BGIOSGA011499 Oryza indica BGIOSGA011499 N
BGIOSGA023624 Oryza indica BGIOSGA023624 N
BGIOSGA031474 Oryza indica BGIOSGA031474 N
OLONG_005983 Oryza longistaminata OLONG_005983 N
OMERI03G02800 Oryza meridionalis OMERI03G02800 N
OMERI06G27810 Oryza meridionalis OMERI06G27810 N
OMERI10G13920 Oryza meridionalis OMERI10G13920 N
ONIVA03G02430 Oryza nivara ONIVA03G02430 N
ONIVA06G30800 Oryza nivara ONIVA06G30800 N
ONIVA10G19680 Oryza nivara ONIVA10G19680 N
OPUNC03G02570 Oryza punctata OPUNC03G02570 N
OPUNC06G25390 Oryza punctata OPUNC06G25390 N
OPUNC10G15730 Oryza punctata OPUNC10G15730 N
ORUFI03G02540 Oryza rufipogon ORUFI03G02540 N
ORUFI06G29810 Oryza rufipogon ORUFI06G29810 N
ORUFI10G18500 Oryza rufipogon ORUFI10G18500 N
OS03G0135700 Oryza sativa OS03G0135700 N
OS10G0544200 Oryza sativa OS10G0544200 N
Pavir.Ia04450 Panicum virgatum Pavir.Ia04450 N
Pavir.Ib00206 Panicum virgatum Pavir.Ib00206 N
Pavir.J18000 Panicum virgatum Pavir.J18000 N
Pavir.J18595 Panicum virgatum Pavir.J18595 N
Pavir.J25463 Panicum virgatum Pavir.J25463 N
PDK_20s1771821g001 Phoenix dactylifera PDK_20s1771821g001 N
POPTR_0002s10910 Populus trichocarpa POPTR_0002s10910 N
Pm002283 Prunus mume Pm002283 N
Pm004330 Prunus mume Pm004330 N
PRUPE_ppa007656mg Prunus persica PRUPE_ppa007656mg N
PRUPE_ppa016514mg Prunus persica PRUPE_ppa016514mg N
28179.m000457 Ricinus communis 28179.m000457 N
29596.m000688 Ricinus communis 29596.m000688 N
30131.m006993 Ricinus communis 30131.m006993 I
SapurV1A.0004s0900 Salix purpurea SapurV1A.0004s0900 N
SELMODRAFT_77288 Selaginella moellendorffii SELMODRAFT_77288 N
Si006877m.g Setaria italica Si006877m.g N
Si036470m.g Setaria italica Si036470m.g N
Solyc02g063430.2 Solanum lycopersicum Solyc02g063430.2 N
Solyc02g091690.2 Solanum lycopersicum Solyc02g091690.2 N
Solyc12g088130.1 Solanum lycopersicum Solyc12g088130.1 N
PGSC0003DMG400002056 Solanum tuberosum PGSC0003DMG400002056 N
PGSC0003DMG400006394 Solanum tuberosum PGSC0003DMG400006394 N
PGSC0003DMG400010388 Solanum tuberosum PGSC0003DMG400010388 N
PGSC0003DMG400030616 Solanum tuberosum PGSC0003DMG400030616 N
Sb01g047940 Sorghum bicolor Sb01g047940 N
Sb10g030470 Sorghum bicolor Sb10g030470 N
TCM_000915 Theobroma cacao TCM_000915 N
TCM_034574 Theobroma cacao TCM_034574 N
Traes_3AS_1FD49785C Triticum aestivum Traes_3AS_1FD49785C N
Traes_4BL_0F2281616 Triticum aestivum Traes_4BL_0F2281616 N
Traes_4DL_0075CCAD9 Triticum aestivum Traes_4DL_0075CCAD9 N
Traes_4DL_1C0F38900 Triticum aestivum Traes_4DL_1C0F38900 N
Traes_4DL_5851FBD0C Triticum aestivum Traes_4DL_5851FBD0C N
Traes_4DL_ACF3BE9C5 Triticum aestivum Traes_4DL_ACF3BE9C5 N
Traes_7DL_67FF12B6A Triticum aestivum Traes_7DL_67FF12B6A N
TRIUR3_23651 Triticum urartu TRIUR3_23651 N
TRIUR3_29035 Triticum urartu TRIUR3_29035 N
VIT_17s0000g03550 Vitis vinifera VIT_17s0000g03550 N
VIT_18s0001g08040 Vitis vinifera VIT_18s0001g08040 N
GRMZM2G128807 Zea mays GRMZM2G128807 N
GRMZM2G173372 Zea mays GRMZM2G173372 N
GRMZM2G435015 Zea mays GRMZM2G435015 N