CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA20G02161
(
Glycine max
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
GLYMA20G02161
T218922_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.742
0.667
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.742
0.667
WOX13
M02049_2.00
Arabidopsis thaliana
YTGATTGA
TCAATCAR
PBM
Weirauch et al.(2014)
pTH6461
0.621
0.474
WOX13
M00866_2.00
Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN
PBM
Franco-Zorrilla et al.(2014)
WOX13
0.621
0.474
GRMZM2G038252
M02137_2.00
Zea mays
HTRATTGV
BCAATYAD
PBM
Weirauch et al.(2014)
pTH6141
0.621
0.439
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA20G02161.1
Homeodomain
76
137
QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQ
GLYMA20G02161.2
Homeodomain
76
137
QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQ
Links
Other
Homeodomain
family TFs
Other
Glycine max
TFs
580 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy