CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0011s00520
(
Populus trichocarpa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
POPTR_0011s00520
T222550_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.864
0.912
ATML1
M10626_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.864
0.912
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.852
0.895
PDF2
M10625_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.852
0.895
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.842
0.754
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.826
0.737
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.826
0.737
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.801
0.719
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.801
0.719
HDG9
M10628_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.801
0.632
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.785
0.719
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.785
0.719
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.785
0.719
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.743
0.649
HDG7
M10629_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.743
0.649
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0011s00520.1
Homeodomain
53
109
KKRYHRHTQRQIQEMEAFFQECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQMKA
Links
Other
Homeodomain
family TFs
Other
Populus trichocarpa
TFs
617 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTERF2
Bos taurus
ENSBTAG00000010144
N
MTERF2
Callithrix jacchus
ENSCJAG00000015094
N
MTERF2
Homo sapiens
ENSG00000120832
N
MTERF2
Gorilla gorilla
ENSGGOG00000025492
N
ENSMEUG00000013008
Macropus eugenii
ENSMEUG00000013008
N
Mterf2
Mus musculus
ENSMUSG00000049038
N
ENSNLEG00000006719
Nomascus leucogenys
ENSNLEG00000006719
N
MTERF2
Ochotona princeps
ENSOPRG00000008669
N
ENSP00000240050-D1
Bos grunniens
ENSP00000240050-D1
N
ENSPPYG00000004910
Pongo abelii
ENSPPYG00000004910
N
MTERF2
Pan troglodytes
ENSPTRG00000005395
N
ENSSTOG00000010181
Ictidomys tridecemlineatus
ENSSTOG00000010181
N
MTERF2
Tursiops truncatus
ENSTTRG00000012809
N
MTERF2
Vicugna pacos
ENSVPAG00000008539
N
Myotis_brandtii_Cry1_10020414
Myotis brandtii
Myotis_brandtii_Cry1_10020414
N