POPTR_0011s00520 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0011s00520 T222550_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN

NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.864 0.912
ATML1
M10626_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.864 0.912
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN

NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.852 0.895
PDF2
M10625_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.852 0.895
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH

DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.842 0.754
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD

HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.826 0.737
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH

DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.826 0.737
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.801 0.719
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.801 0.719
HDG9
M10628_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.801 0.632
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN

NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.785 0.719
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.785 0.719
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.785 0.719
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.743 0.649
HDG7
M10629_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.743 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s00520.1 Homeodomain 53 109

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MTERF2 Bos taurus ENSBTAG00000010144 N
MTERF2 Callithrix jacchus ENSCJAG00000015094 N
MTERF2 Homo sapiens ENSG00000120832 N
MTERF2 Gorilla gorilla ENSGGOG00000025492 N
ENSMEUG00000013008 Macropus eugenii ENSMEUG00000013008 N
Mterf2 Mus musculus ENSMUSG00000049038 N
ENSNLEG00000006719 Nomascus leucogenys ENSNLEG00000006719 N
MTERF2 Ochotona princeps ENSOPRG00000008669 N
ENSP00000240050-D1 Bos grunniens ENSP00000240050-D1 N
ENSPPYG00000004910 Pongo abelii ENSPPYG00000004910 N
MTERF2 Pan troglodytes ENSPTRG00000005395 N
ENSSTOG00000010181 Ictidomys tridecemlineatus ENSSTOG00000010181 N
MTERF2 Tursiops truncatus ENSTTRG00000012809 N
MTERF2 Vicugna pacos ENSVPAG00000008539 N
Myotis_brandtii_Cry1_10020414 Myotis brandtii Myotis_brandtii_Cry1_10020414 N