POPTR_0012s08900 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0012s08900 T222561_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.819 0.860
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.814 0.860
GRMZM2G135447
M02139_2.00 		Zea mays
DTGACRKS
SMYGTCAH		 PBM
Weirauch et al.(2014)
pTH6328 		0.802 0.825
GRMZM2G087741
M02138_2.00 		Zea mays
NNTGACRKCN
NGMYGTCANN		 PBM
Weirauch et al.(2014)
pTH5816 		0.764 0.789
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.709 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s08900.1 Homeodomain 35 94

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

302 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014665 Ailuropoda melanoleuca ENSAMEG00000014665 I
ENSCSAG00000011532 Chlorocebus sabaeus ENSCSAG00000011532 I
ENSMMUP00000018977 Macaca fascicularis ENSMMUP00000018977 I
ENSNLEG00000009749 Nomascus leucogenys ENSNLEG00000009749 I
ENSPANG00000019240 Papio anubis ENSPANG00000019240 I
ENSPPYG00000010734 Pongo abelii ENSPPYG00000010734 I
ENSSTOG00000013576 Ictidomys tridecemlineatus ENSSTOG00000013576 I
ZNF133 Macaca mulatta ENSMMUG00000014453 I
ZNF133 Tursiops truncatus ENSTTRG00000002583 I
ZNF133 Sus scrofa ENSSSCG00000007093 I
ZNF133 Sorex araneus ENSSARG00000000453 I
ZNF133 Pan troglodytes ENSPTRG00000013283 I
ZNF133 Gorilla gorilla ENSGGOG00000015151 I
ZNF133 Homo sapiens ENSG00000125846 D
ZNF133 Felis catus ENSFCAG00000014251 I
ZNF133 Equus caballus ENSECAG00000015243 I
ZNF133 Dasypus novemcinctus ENSDNOG00000033824 I
ZNF133 Callithrix jacchus ENSCJAG00000005089 I
ZNF133 Canis familiaris ENSCAFG00000030504 I