TCM_030175 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_030175 T223927_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.865 0.930
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.865 0.930
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.853 0.912
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.853 0.912
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.843 0.772
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.827 0.754
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.827 0.754
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.802 0.719
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.802 0.719
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.802 0.649
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.786 0.754
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.786 0.754
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.786 0.754
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.744 0.684
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.744 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY28624 Homeodomain 57 113
EOY28625 Homeodomain 57 113
EOY28626 Homeodomain 57 113

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

618 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phatr3_J45560 Phaeodactylum tricornutum Phatr3_J45560 I
Thaps25890 Thalassiosira pseudonana Thaps25890 N
gw1.4.1286.1 Fragilariopsis cylindrus gw1.4.1286.1 N
e_gw1.11.455.1 Fragilariopsis cylindrus e_gw1.11.455.1 N
Thaps9607 Thalassiosira pseudonana Thaps9607 N
Thaps5010 Thalassiosira pseudonana Thaps5010 N
Thaps268481 Thalassiosira pseudonana Thaps268481 N
Thaps268064 Thalassiosira pseudonana Thaps268064 N
Thaps264072 Thalassiosira pseudonana Thaps264072 N
Thaps264036 Thalassiosira pseudonana Thaps264036 N
Phatr3_EG02327 Phaeodactylum tricornutum Phatr3_EG02327 N
Thaps23803 Thalassiosira pseudonana Thaps23803 N
Thaps23802 Thalassiosira pseudonana Thaps23802 N
Thaps22932 Thalassiosira pseudonana Thaps22932 N
Thaps12066 Thalassiosira pseudonana Thaps12066 N
Phatr3_J50481 Phaeodactylum tricornutum Phatr3_J50481 N
Phatr3_J44586 Phaeodactylum tricornutum Phatr3_J44586 N