CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Traes_4AL_99A941299 *(Triticum aestivum)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Traes_4AL_99A941299	T224194_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.813	0.768
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.790	0.696
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.790	0.696
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.781	0.750
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.781	0.750
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.781	0.750
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.781	0.750
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.776	0.714
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.776	0.714
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.776	0.714
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.776	0.714
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.758	0.732
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.758	0.732
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.758	0.732
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.758	0.732
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.754	0.625
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.754	0.625
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.751	0.696
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.751	0.696
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.749	0.643
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.749	0.643
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.655	0.714
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.655	0.714
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.635	0.696
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.635	0.696
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Traes_4AL_99A941299.1	Homeodomain	61	116	GKKRRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Triticum aestivum* TFs

796 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGABI2DRAFT_115352	Agaricus bisporus	AGABI2DRAFT_115352	N
CC1G_05197	Coprinopsis cinerea	CC1G_05197	N
CERSUDRAFT_113870	Ceriporiopsis subvermispora	CERSUDRAFT_113870	N
CY34DRAFT_86381	Suillus luteus	CY34DRAFT_86381	N
estExt_fgenesh2_pm.C_20470	Heterobasidion annosum	estExt_fgenesh2_pm.C_20470	N
estExt_fgeneshPB_pg.C_20275	Phycomyces blakesleeanus	estExt_fgeneshPB_pg.C_20275	N
estExt_fgeneshPB_pg.C_90126	Phycomyces blakesleeanus	estExt_fgeneshPB_pg.C_90126	N
fgenesh1_pg.C_scaffold_1000689	Phanerochaete chrysosporium	fgenesh1_pg.C_scaffold_1000689	N
FIBRA_05018	Fibroporia radiculosa	FIBRA_05018	N
FOMPIDRAFT_125143	Fomitopsis pinicola	FOMPIDRAFT_125143	N
GALMADRAFT_221259	Galerina marginata	GALMADRAFT_221259	N
GLOTRDRAFT_120223	Gloeophyllum trabeum	GLOTRDRAFT_120223	N
GYMLUDRAFT_40883	Gymnopus luxurians	GYMLUDRAFT_40883	N
HETIRDRAFT_457419	Heterobasidion irregulare	HETIRDRAFT_457419	N
JAAARDRAFT_124082	Jaapia argillacea	JAAARDRAFT_124082	N
K443DRAFT_163922	Laccaria amethystina	K443DRAFT_163922	N
LACBIDRAFT_325071	Laccaria bicolor	LACBIDRAFT_325071	N
M378DRAFT_7389	Amanita muscaria	M378DRAFT_7389	N
M404DRAFT_122646	Pisolithus tinctorius	M404DRAFT_122646	N
M407DRAFT_110022	Tulasnella calospora	M407DRAFT_110022	N
M408DRAFT_271581	Serendipita vermifera	M408DRAFT_271581	N
M413DRAFT_40683	Hebeloma cylindrosporum	M413DRAFT_40683	N
Moror_6620	Moniliophthora roreri	Moror_6620	N
PAXRUDRAFT_821418	Paxillus rubicundulus	PAXRUDRAFT_821418	N
PHLGIDRAFT_37209	Phlebiopsis gigantea	PHLGIDRAFT_37209	N
PIIN_06315	Piriformospora indica	PIIN_06315	N
PILCRDRAFT_289090	Piloderma croceum	PILCRDRAFT_289090	N
PISMIDRAFT_677699	Pisolithus microcarpus	PISMIDRAFT_677699	N
PLEOSDRAFT_172367	Pleurotus ostreatus	PLEOSDRAFT_172367	N
SCLCIDRAFT_127645	Scleroderma citrinum	SCLCIDRAFT_127645	N
SERLA73DRAFT_94127	Serpula lacrymans	SERLA73DRAFT_94127	N

Traes_4AL_99A941299 (Triticum aestivum) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

796 Related TFs

Traes_4AL_99A941299 **(Triticum aestivum)
Homeodomain**