CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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YQE_04514
(
Dendroctonus ponderosae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
YQE_04514
T224793_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q70LF3_ARTSF
M02211_2.00
Artemia franciscana
BTAATTAB
VTAATTAV
PBM
Weirauch et al.(2014)
pTH5553
0.830
0.772
cad
M03780_2.00
Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN
SELEX
Nitta et al.(2015)
cad_1
0.827
0.772
cad
M03781_2.00
Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_2
0.827
0.772
cad
M03782_2.00
Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_3
0.827
0.772
cad
M03783_2.00
Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN
SELEX
Nitta et al.(2015)
cad_4
0.827
0.772
cad
M06223_2.00
Drosophila melanogaster
HTTWATTR
YAATWAAD
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
0.827
0.772
cad
M06224_2.00
Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
0.827
0.772
cad
M06225_2.00
Drosophila melanogaster
NTTWATKR
YMATWAAN
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
0.827
0.772
cad
M08420_2.00
Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH
ChIP-chip
Mathelier et al.(2014)
MA0216.2
0.827
0.772
cad
M09580_2.00
Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
0.827
0.772
cad
M09674_2.00
Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD
Misc
Kulakovskiy et al.(2009)
cad
0.827
0.772
cad
M10783_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$CAD_Q6
0.827
0.772
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB
VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.819
0.789
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN
NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.819
0.789
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB
VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.819
0.789
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB
VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.819
0.789
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.819
0.789
CDX2
M10723_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.819
0.789
CDX2
M10724_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.819
0.789
CDX2
M10725_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.819
0.789
CDX2
M10726_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.819
0.789
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.819
0.789
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN
NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.819
0.772
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.819
0.772
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC
GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.819
0.772
CDX1
M10761_2.00
Gallus gallus
BDBWAAK
MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.819
0.772
CDX1
M10762_2.00
Gallus gallus
WWWWMYR
YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.819
0.772
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN
NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.819
0.754
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB
VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.819
0.754
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN
NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.819
0.754
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.819
0.754
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.819
0.754
CDX1
M10670_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.819
0.754
CDX1
M10671_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.819
0.754
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB
VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.819
0.754
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH
DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.787
0.754
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH
DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.787
0.754
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN
NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.787
0.754
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN
NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.787
0.754
pal-1
M02183_2.00
Caenorhabditis elegans
GYAATWAA
TTWATTRC
PBM
Weirauch et al.(2014)
pTH6016
0.652
0.596
Q9GP48_9TURB
M02217_2.00
Discocelis tigrina
DTAATTAB
VTAATTAH
PBM
Weirauch et al.(2014)
pTH6515
0.617
0.649
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA
TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.605
0.491
hoxd13a
M02081_2.00
Danio rerio
WTTTATDR
YHATAAAW
PBM
Weirauch et al.(2014)
pTH6143
0.602
0.544
HOXD13
M00299_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_REF
0.601
0.526
Hoxd13
M00394_2.00
Mus musculus
NWTHRYDDN
NHHRYDAWN
PBM
Berger et al.(2008)
Hoxd13_2356
0.601
0.526
HOXD13
M03141_2.00
Homo sapiens
DTTTTATKRS
SYMATAAAAH
SELEX
Jolma et al.(2013)
HOXD13_1
0.601
0.526
HOXD13
M03142_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXD13_2
0.601
0.526
Hoxd13
M03247_2.00
Mus musculus
DKTTTATTRS
SYAATAAAMH
SELEX
Jolma et al.(2013)
Hoxd13_1
0.601
0.526
Hoxd13
M03248_2.00
Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH
SELEX
Jolma et al.(2013)
Hoxd13_2
0.601
0.526
HOXD13
M05122_2.00
Homo sapiens
GKTTTATKGSS
SSCMATAAAMC
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
0.601
0.526
HOXD13
M05123_2.00
Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
0.601
0.526
HOXD13
M10689_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD13_Q6
0.601
0.526
HOXD13
M00298_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_R306W
0.601
0.526
HOXD13
M05124_2.00
Homo sapiens
DDTTTATTRBB
VVYAATAAAHH
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
0.601
0.526
HOXD13
M05125_2.00
Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
0.601
0.526
HOXD13
M00295_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_N298S
0.601
0.509
HOXD13
M00300_2.00
Homo sapiens
WTTTATDR
YHATAAAW
PBM
Barrera et al.(2016)
HOXD13_S316C
0.601
0.509
HOXD13
M00293_2.00
Homo sapiens
NTTWAYDDNN
NNHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_I297V
0.601
0.509
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENN79028
Homeodomain
19
82
RKTRTKDKYRVVYTDHQRLQLEKEYSLNTRYINIKRKAEIALDLNLSERQVKIWFQNRRAKDRK
Links
Other
Homeodomain
family TFs
Other
Dendroctonus ponderosae
TFs
348 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29908.m006165
Ricinus communis
29908.m006165
I
Aquca_014_00181
Aquilegia coerulea
Aquca_014_00181
I
BGIOSGA005542
Oryza indica
BGIOSGA005542
I
BGIOSGA011061
Oryza indica
BGIOSGA011061
I
BGIOSGA022531
Oryza indica
BGIOSGA022531
I
Bo5g034880
Brassica oleracea
Bo5g034880
I
Bo6g004620
Brassica oleracea
Bo6g004620
I
Bo6g121400
Brassica oleracea
Bo6g121400
I
Bo8g071150
Brassica oleracea
Bo8g071150
I
Bostr.12302s0095
Boechera stricta
Bostr.12302s0095
I
Bostr.12659s0041
Boechera stricta
Bostr.12659s0041
I
Bostr.20129s0200
Boechera stricta
Bostr.20129s0200
I
Bra012298
Brassica rapa
Bra012298
I
Bra015660
Brassica rapa
Bra015660
I
Bra016400
Brassica rapa
Bra016400
I
Bra036022
Brassica rapa
Bra036022
I
Bra040309
Brassica rapa
Bra040309
I
BRADI1G46120
Brachypodium distachyon
BRADI1G46120
I
BRADI3G57867
Brachypodium distachyon
BRADI3G57867
I
Cagra.1192s0001
Capsella grandiflora
Cagra.1192s0001
I
Cagra.2306s0038
Capsella grandiflora
Cagra.2306s0038
I
Carubv10010179m.g
Capsella rubella
Carubv10010179m.g
I
Carubv10010259m.g
Capsella rubella
Carubv10010259m.g
I
cassava28944.valid.m1
Manihot esculenta
cassava28944.valid.m1
I
cassava44357.m1
Manihot esculenta
cassava44357.m1
I
Ca_25824
Cicer arietinum
Ca_25824
I
Ciclev10002294m.g
Citrus clementina
Ciclev10002294m.g
I
Cla014165
Citrullus lanatus
Cla014165
I
Cla023512
Citrullus lanatus
Cla023512
I
Cucsa.365220
Cucumis sativus
Cucsa.365220
I
Cucsa.372760
Cucumis sativus
Cucsa.372760
I
DREB26
Arabidopsis lyrata
fgenesh2_kg.1__2381__AT1G21910.1
I
ERF012
Arabidopsis thaliana
AT1G21910
D
ERF013
Arabidopsis thaliana
AT1G77640
D
ERF014
Arabidopsis thaliana
AT1G44830
D
Eucgr.F03772
Eucalyptus grandis
Eucgr.F03772
I
evm.TU.supercontig_36.41
Carica papaya
evm.TU.supercontig_36.41
I
F775_17148
Aegilops tauschii
F775_17148
I
F775_20580
Aegilops tauschii
F775_20580
I
fgenesh2_kg.1__3777__AT1G44830.1
Arabidopsis lyrata
fgenesh2_kg.1__3777__AT1G44830.1
I
fgenesh2_kg.2__2058__AT1G77640.1
Arabidopsis lyrata
fgenesh2_kg.2__2058__AT1G77640.1
I
gene11145-v1.0-hybrid
Fragaria vesca
gene11145-v1.0-hybrid
I
GLYMA04G43040
Glycine max
GLYMA04G43040
I
GLYMA06G11700
Glycine max
GLYMA06G11700
I
GLYMA13G02860
Glycine max
GLYMA13G02860
I
GLYMA14G22970
Glycine max
GLYMA14G22970
I
Gorai.002G220900
Gossypium raimondii
Gorai.002G220900
I
Gorai.009G244500
Gossypium raimondii
Gorai.009G244500
I
Gorai.010G048900
Gossypium raimondii
Gorai.010G048900
I
GRMZM2G007406
Zea mays
GRMZM2G007406
I
GRMZM2G011110
Zea mays
GRMZM2G011110
I
GRMZM2G015281
Zea mays
GRMZM2G015281
I
GRMZM2G021369
Zea mays
GRMZM2G021369
I
GRMZM2G084264
Zea mays
GRMZM2G084264
I
GSMUA_Achr10G19460_001
Musa acuminata
GSMUA_Achr10G19460_001
I
GSMUA_Achr10G25270_001
Musa acuminata
GSMUA_Achr10G25270_001
I
GSMUA_Achr10G30100_001
Musa acuminata
GSMUA_Achr10G30100_001
I
GSMUA_Achr8G23240_001
Musa acuminata
GSMUA_Achr8G23240_001
I
LPERR02G27720
Leersia perrieri
LPERR02G27720
I
LPERR03G10190
Leersia perrieri
LPERR03G10190
I
LPERR06G06370
Leersia perrieri
LPERR06G06370
I
Lus10003740.g
Linum usitatissimum
Lus10003740.g
I
Lus10028032.g
Linum usitatissimum
Lus10028032.g
I
MDP0000120147
Malus domestica
MDP0000120147
I
MDP0000319736
Malus domestica
MDP0000319736
I
MDP0000923690
Malus domestica
MDP0000923690
I
mgf021045m
Mimulus guttatus
mgf021045m
I
mgf023290m
Mimulus guttatus
mgf023290m
I
MLOC_70931
Hordeum vulgare
MLOC_70931
I
MTR_3g072610
Medicago truncatula
MTR_3g072610
I
MTR_5g058470
Medicago truncatula
MTR_5g058470
I
OB03G21640
Oryza brachyantha
OB03G21640
I
OBART03G11470
Oryza barthii
OBART03G11470
I
OBART06G07000
Oryza barthii
OBART06G07000
I
OGLUM02G34320
Oryza glumaepatula
OGLUM02G34320
I
OGLUM03G11430
Oryza glumaepatula
OGLUM03G11430
I
OGLUM06G07380
Oryza glumaepatula
OGLUM06G07380
I
OMERI02G32260
Oryza meridionalis
OMERI02G32260
I
OMERI03G10750
Oryza meridionalis
OMERI03G10750
I
OMERI06G08130
Oryza meridionalis
OMERI06G08130
I
ONIVA02G33600
Oryza nivara
ONIVA02G33600
I
ONIVA03G12660
Oryza nivara
ONIVA03G12660
I
ONIVA06G08290
Oryza nivara
ONIVA06G08290
I
OPUNC02G31280
Oryza punctata
OPUNC02G31280
I
OPUNC03G11030
Oryza punctata
OPUNC03G11030
I
OPUNC06G06600
Oryza punctata
OPUNC06G06600
I
orange1.1g039680m.g
Citrus sinensis
orange1.1g039680m.g
I
ORGLA03G0110800
Oryza glaberrima
ORGLA03G0110800
I
ORGLA06G0065100
Oryza glaberrima
ORGLA06G0065100
I
ORUFI03G11820
Oryza rufipogon
ORUFI03G11820
I
OS02G0767800
Oryza sativa
OS02G0767800
I
OS03G0263000
Oryza sativa
OS03G0263000
I
Pavir.Ia03856
Panicum virgatum
Pavir.Ia03856
I
Pavir.Ib01111
Panicum virgatum
Pavir.Ib01111
I
Pavir.J02555
Panicum virgatum
Pavir.J02555
I
Pavir.J23882
Panicum virgatum
Pavir.J23882
I
Pavir.J26231
Panicum virgatum
Pavir.J26231
I
PGSC0003DMG400000910
Solanum tuberosum
PGSC0003DMG400000910
I
Pm004870
Prunus mume
Pm004870
I
POPTR_0002s08610
Populus trichocarpa
POPTR_0002s08610
I
POPTR_0005s15830
Populus trichocarpa
POPTR_0005s15830
I
PRUPE_ppa010649mg
Prunus persica
PRUPE_ppa010649mg
I
SapurV1A.0010s0960
Salix purpurea
SapurV1A.0010s0960
I
SapurV1A.0105s0160
Salix purpurea
SapurV1A.0105s0160
I
SapurV1A.3198s0010
Salix purpurea
SapurV1A.3198s0010
I
Sb01g040280
Sorghum bicolor
Sb01g040280
I
Sb04g034290
Sorghum bicolor
Sb04g034290
I
Sb10g006980
Sorghum bicolor
Sb10g006980
I
Si007977m.g
Setaria italica
Si007977m.g
I
Si039170m.g
Setaria italica
Si039170m.g
I
Solyc11g012980.1
Solanum lycopersicum
Solyc11g012980.1
I
TCM_035077
Theobroma cacao
TCM_035077
I
Thhalv10008639m.g
Eutrema salsugineum
Thhalv10008639m.g
I
Thhalv10011778m.g
Eutrema salsugineum
Thhalv10011778m.g
I
Thhalv10019045m.g
Eutrema salsugineum
Thhalv10019045m.g
I
Traes_4AS_18663793B
Triticum aestivum
Traes_4AS_18663793B
I
Traes_4BL_762F09E09
Triticum aestivum
Traes_4BL_762F09E09
I
Traes_4DL_FB8B5AAEB
Triticum aestivum
Traes_4DL_FB8B5AAEB
I
VIT_18s0001g03240
Vitis vinifera
VIT_18s0001g03240
I