CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Afo_R002868
(
Aptenodytes forsteri
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Afo_R002868
T225047_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmx2
M00507_2.00
Mus musculus
NHRANYGNNN
NNNCRNTYDN
PBM
Berger et al.(2008)
Hmx2_3424
0.558
1.000
HMX2
M03234_2.00
Homo sapiens
NNTTAAKTGNN
NNCAMTTAANN
SELEX
Jolma et al.(2013)
HMX2_1
0.558
1.000
HMX2
M05373_2.00
Homo sapiens
GNHRAKYGS
SCRMTYDNC
SELEX
Yin et al.(2017)
HMX2_eDBD_HT-SELEX
0.558
1.000
HMX2
M05375_2.00
Homo sapiens
NTTAAKTGNN
NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_HT-SELEX
0.558
1.000
HMX2
M05374_2.00
Homo sapiens
NNTAAKTGN
NCAMTTANN
SELEX
Yin et al.(2017)
HMX2_eDBD_Methyl-HT-SELEX
0.558
1.000
HMX2
M05376_2.00
Homo sapiens
NTTAAKTGNN
NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_Methyl-HT-SELEX
0.558
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Afo_R002868
Homeodomain
1
51
FSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKR
Links
Other
Homeodomain
family TFs
Other
Aptenodytes forsteri
TFs
279 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action