CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Brh_R000011
(
Buceros rhinoceros
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Brh_R000011
T225298_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HOXD4
M05273_2.00
Homo sapiens
NTMATKRV
BYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX
0.364
1.000
HOXD4
M05276_2.00
Homo sapiens
NTAATKRB
VYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX
0.364
1.000
HOXD4
M05274_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1
0.364
1.000
HOXD4
M05275_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2
0.364
1.000
HOXD4
M05277_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1
0.364
1.000
HOXD4
M05278_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2
0.364
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Brh_R000011
Homeodomain
1
43
YTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQ
Links
Other
Homeodomain
family TFs
Other
Buceros rhinoceros
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gfo_R000008
Geospiza fortis
Gfo_R000008
N
0.758
ENSECAG00000002506
Equus caballus
ENSECAG00000002506
I
0.747
ISCW012461
Ixodes scapularis
ISCW012461
N
0.727
ANCDUO_19178
Ancylostoma duodenale
ANCDUO_19178
N
0.727
SCUD_0000383301
Schistosoma curassoni
SCUD_0000383301
N
0.715
Ocbimv22024374m.g
Octopus bimaculoides
Ocbimv22024374m.g
N
0.688
snap_masked-nMf.1.1.scaf13062-processed-gene-0.2
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf13062-processed-gene-0.2
N
0.672
Ca_23643
Cicer arietinum
Ca_23643
N
0.670
ORUFI09G21220
Oryza rufipogon
ORUFI09G21220
N
0.667
M407DRAFT_77617
Tulasnella calospora
M407DRAFT_77617
N
0.658
LDEC024564
Leptinotarsa decemlineata
LDEC024564
N
0.650
ENSTGUG00000011379
Taeniopygia guttata
ENSTGUG00000011379
I
0.638
Aan_R001812
Calypte anna
Aan_R001812
N
0.638
Aan_R007134
Calypte anna
Aan_R007134
I
0.638
Afo_R002867
Aptenodytes forsteri
Afo_R002867
I
0.638
Ogr09559
Ophisaurus gracilis
Ogr09559
N
0.622
Afo_R002868
Aptenodytes forsteri
Afo_R002868
I
0.620
Hba_10731
Heterorhabditis bacteriophora
Hba_10731
N
0.609
ANCCAN_25804
Ancylostoma caninum
ANCCAN_25804
N
0.604
hoxc6.S
Xenopus laevis
XB-GENE-865143
I
0.603
WUBG_02755
Wuchereria bancrofti
WUBG_02755
N
0.601
CBG05223
Caenorhabditis briggsae
CBG05223
N
0.601
AFAF004701
Anopheles farauti
AFAF004701
N
0.600
ENSACAG00000017905
Anolis carolinensis
ENSACAG00000017905
I
0.364
ENSAMEG00000001837
Ailuropoda melanoleuca
ENSAMEG00000001837
I
0.364
ENSAMXG00000007015
Astyanax mexicanus
ENSAMXG00000007015
I
0.364
ENSAPLG00000008983
Anas platyrhynchos
ENSAPLG00000008983
I
0.364
HOXD4
Bos taurus
ENSBTAG00000039581
I
0.364
HOXD4
Canis familiaris
ENSCAFG00000013452
I
0.364
HOXD4
Choloepus hoffmanni
ENSCHOG00000004176
I
0.364
HOXD4
Callithrix jacchus
ENSCJAG00000008286
I
0.364
ENSCPOG00000005501
Cavia porcellus
ENSCPOG00000005501
I
0.364
ENSCSAG00000014429
Chlorocebus sabaeus
ENSCSAG00000014429
I
0.364
hoxd4a
Danio rerio
ENSDARG00000059276
I
0.364
HOXD4
Dasypus novemcinctus
ENSDNOG00000019805
I
0.364
ENSDORG00000009442
Dipodomys ordii
ENSDORG00000009442
I
0.364
HOXD4
Echinops telfairi
ENSETEG00000019404
I
0.364
ENSFALG00000003181
Ficedula albicollis
ENSFALG00000003181
I
0.364
HOXD4
Homo sapiens
ENSG00000170166
D
0.364
ENSGACG00000004551
Gasterosteus aculeatus
ENSGACG00000004551
I
0.364
HOXD4
Gallus gallus
ENSGALG00000023419
I
0.364
HOXD4
Gorilla gorilla
ENSGGOG00000001345
I
0.364
ENSGMOG00000004261
Gadus morhua
ENSGMOG00000004261
I
0.364
ENSLACG00000008693
Latimeria chalumnae
ENSLACG00000008693
I
0.364
HOXD4
Loxodonta africana
ENSLAFG00000005480
I
0.364
ENSLOCG00000007074
Lepisosteus oculatus
ENSLOCG00000007074
I
0.364
ENSMEUG00000016575
Macropus eugenii
ENSMEUG00000016575
I
0.364
HOXD4
Microcebus murinus
ENSMICG00000004283
I
0.364
HOXD4
Myotis lucifugus
ENSMLUG00000012508
I
0.364
ENSMMUG00000023506
Macaca mulatta
ENSMMUG00000023506
I
0.364
HOXD4
Monodelphis domestica
ENSMODG00000009598
I
0.364
ENSMPUG00000014070
Mustela putorius furo
ENSMPUG00000014070
I
0.364
Hoxd4
Mus musculus
ENSMUSG00000101174
I
0.364
ENSNLEG00000006014
Nomascus leucogenys
ENSNLEG00000006014
I
0.364
HOXD4
Ornithorhynchus anatinus
ENSOANG00000008617
I
0.364
ENSOARG00000017483
Ovis aries
ENSOARG00000017483
I
0.364
HOXD4
Oryctolagus cuniculus
ENSOCUG00000002413
I
0.364
HOXD4
Otolemur garnettii
ENSOGAG00000029168
I
0.364
ENSONIG00000008612
Oreochromis niloticus
ENSONIG00000008612
I
0.364
ENSOPRG00000004081
Ochotona princeps
ENSOPRG00000004081
I
0.364
ENSORLG00000017548
Oryzias latipes
ENSORLG00000017548
I
0.364
ENSPANG00000000542
Papio anubis
ENSPANG00000000542
I
0.364
HOXD4
Procavia capensis
ENSPCAG00000015781
I
0.364
ENSPFOG00000014015
Poecilia formosa
ENSPFOG00000014015
I
0.364
ENSPSIG00000003079
Pelodiscus sinensis
ENSPSIG00000003079
I
0.364
HOXD4
Pan troglodytes
ENSPTRG00000012671
I
0.364
Hoxd4
Rattus norvegicus
ENSRNOG00000001578
I
0.364
ENSSHAG00000016086
Sarcophilus harrisii
ENSSHAG00000016086
I
0.364
HOXD4
Sus scrofa
ENSSSCG00000015984
I
0.364
ENSSTOG00000029055
Ictidomys tridecemlineatus
ENSSTOG00000029055
I
0.364
HOXD4
Tursiops truncatus
ENSTTRG00000013778
I
0.364
ENSXMAG00000000434
Xiphophorus maculatus
ENSXMAG00000000434
I
0.364
Aan_R004558
Calypte anna
Aan_R004558
I
0.364
Afo_R006934
Aptenodytes forsteri
Afo_R006934
I
0.364
Brh_R006731
Buceros rhinoceros
Brh_R006731
I
0.364
Cmyd_10010791
Chelonia mydas
Cmyd_10010791
I
0.364
ENSMMUP00000030942
Macaca fascicularis
ENSMMUP00000030942
I
0.364
ENSP00000407978-D3
Bos grunniens
ENSP00000407978-D3
I
0.364
Gfo_R001383
Geospiza fortis
Gfo_R001383
I
0.364
Myotis_brandtii_HOXD4_10035001
Myotis brandtii
Myotis_brandtii_HOXD4_10035001
I
0.364
Ogr14613
Ophisaurus gracilis
Ogr14613
I
0.364
Pvit_11709
Pogona vitticeps
Pvit_11709
I
0.364
Tal_R008970
Tyto alba
Tal_R008970
I
0.364