CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm025458
(
Prunus mume
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pm025458
T226680_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WOX11
M06916_2.00
Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT
Dap-seq
OMalley et al.(2016)
WOX11_col_a
0.819
0.912
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm025458
Homeodomain
22
83
VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGTIGDANVFYWFQNRRSRSRR
Links
Other
Homeodomain
family TFs
Other
Prunus mume
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy