CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pg.C_scaffold_1001003
(
Mycosphaerella fijiensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
fgenesh1_pg.C_scaffold_1001003
T227463_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pbx1
M09213_2.00
Mus musculus
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PBX1_MOUSE.H11MO.0.A
0.609
0.304
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_1001003
Homeodomain
42
87
RQKRRRTSPQDQMILEAAYKNDPKPDKAARLELVKQTSLGEKEVQE
Links
Other
Homeodomain
family TFs
Other
Mycosphaerella fijiensis
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MYCFIDRAFT_76128
Pseudocercospora fijiensis
MYCFIDRAFT_76128
I
0.867
UCRNP2_7717
Neofusicoccum parvum
UCRNP2_7717
I
0.813
HmN_000400100
Hymenolepis microstoma
HmN_000400100
I
0.670
PXEA_0001880101
Protopolystoma xenopodis
PXEA_0001880101
I
0.649
M7I_7350
Glarea lozoyensis
M7I_7350
N
0.642
ENSTBEG00000007209
Tupaia belangeri
ENSTBEG00000007209
N
0.626
SVUK_0000462001
Strongylus vulgaris
SVUK_0000462001
I
0.620
O9G_001635
Rozella allomycis
O9G_001635
N
0.613
Myotis_brandtii_MIMI_L668_10004071
Myotis brandtii
Myotis_brandtii_MIMI_L668_10004071
I
0.612
Myotis_brandtii_MIMI_R196_10004074
Myotis brandtii
Myotis_brandtii_MIMI_R196_10004074
I
0.612
ENSACAG00000003721
Anolis carolinensis
ENSACAG00000003721
I
0.610
ENSGMOG00000006428
Gadus morhua
ENSGMOG00000006428
I
0.610
ENSSTOG00000013679
Ictidomys tridecemlineatus
ENSSTOG00000013679
I
0.610
PBX3
Tupaia belangeri
ENSTBEG00000016855
I
0.610
Ogr15448
Ophisaurus gracilis
Ogr15448
I
0.610
ANCDUO_01775
Ancylostoma duodenale
ANCDUO_01775
I
0.610
CABZ01017151.1
Danio rerio
ENSDARG00000104156
I
0.609
PBX1
Homo sapiens
ENSG00000185630
D
0.609
ENSLACG00000016442
Latimeria chalumnae
ENSLACG00000016442
I
0.609
ENSLOCG00000006841
Lepisosteus oculatus
ENSLOCG00000006841
I
0.609
ENSMEUG00000002971
Macropus eugenii
ENSMEUG00000002971
I
0.609
ENSMEUG00000006330
Macropus eugenii
ENSMEUG00000006330
I
0.609
Pbx1
Mus musculus
ENSMUSG00000052534
D
0.609
PBX4
Oryctolagus cuniculus
ENSOCUG00000029208
I
0.609
PBX1
Oryzias latipes
ENSORLG00000016702
I
0.609
MESCA000707
Megaselia scalaris
MESCA000707
I
0.609
Brh_R010078
Buceros rhinoceros
Brh_R010078
I
0.609
MDOA002143
Musca domestica
MDOA002143
I
0.609
PPAI000859
Phlebotomus papatasi
PPAI000859
I
0.609
A_00975
Schistosoma haematobium
A_00975
I
0.609
D915_05491
Fasciola hepatica
D915_05491
I
0.609
CRE30241
Caenorhabditis remanei
CRE30241
I
0.601
AEPI008243
Anopheles epiroticus
AEPI008243
I
0.599